Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02572 ATGGGTAAGAAGTTAGGGGGTTGGGAGTGCAGGAGCAGTTTGCAGTGCTGTGGAAATTTGTGGCCTCAGGCACGCTATCCTTCGATGACGGCGGTGGAAGCGGGAAAGACGGTGGTGGAAGGATCAGAAACCACCGTGGTTTTGTTCAGCGTTATTGGAATGACGTGTGCTGCGTGCGCCGGATCCGTCGAGAAAACCATCAAACGCTTACCTGGAATCCGAGAGGCCGTTGTTGATGTCTTGAATCACAAAGCTCAGGTTCTTTACTTTCCGTCAATGGTTAACGAGGAGAGGATACGCGAGGCCATTGAAGATGCTGGATTTGAAGCCAAAGTTATTGAAGAAGACTCCAACTACACCTCAACTCAAATATGCCGCATACACATTCGAGGCATGACGTGTACCTCTTGCTCCTCCACTATTGAATCAGCTCTACATTCCCTTCGTGGGGTGCATAAGGCACGAGTGGCCTTAACAACAGAAGAAGCAGAAGTCCAGTATGACCCCAAAATCCTCACCCACAACCACTTAATGGAAGCTATACAAGACACCGGGTTCGAAGCCATACTAATAAGCACAGGGGAACACATGAGCAAGATTGAACTTAAAATCGATGGCATTAAAAACGACCAATCCCTTGCTGCCATTCAGCGCTCTCTCCATGCACTCCCTGGTGTTCAAACCATAGACATATATCCGGACATTAACAAAATTGCCATAACTTATATACCACACATGACAGGACCAAGAACCTTCATAGAAGTCATAGAATCCACTGGATCAGGGTGTTTTAAAGCGGTGATATTTCCAAACGATGAAGGAAGAGAAGCACTTAGACAGCAGGAAATTAACCGATACTTCATGCTTTTCATATGGAGTTTAGCTTTTACCATTCCTGTTTTCTTTACATCCATGGTTCTCATGTATATACCTGGAGTTAAACGTGTTTTGGATATCAAAATTGTCAATATGTTGACTATTGGACTTCTCTTGAGGTGTAACTTTGCTACCCCGGTGCAGTTTATCATAGGGAGACGGTTCTATGTTGGGGCATATAAAGCATTGCGCAAAGGTTCTGCTAACATGGATGTGTTGATAGCATTAGGGACAAATGCAGCATATTTTTATTCTCTCTATGTTGTGGAAAGAGCTGTTTTCTCTCGGCATTTCAAAGGAAACGATTTCTTTGAGACCAGCTCTATGCTTATTTCTTTTATTCTGTTGGGGAAGTATTTGGAAGTGTTGGCAAAGGGGAAGACATCTCAGGCCATTGCAAAGCTTATGAACTTGACACCTGAGACAGCGACCTTGTTAACTCAAGATGACAATGGGGATGTTGTTAGTGAAAAACAAATTGATAGTCGGTTGATACAAAAGGACGATGTGATCAAGGTTGTCCCTGGTTCAAAAGTAGCATCTGATGGCTTTGTCATATGGGGACAAAGTCATGTAAATGAGAGCATGATAACCGGAGAGGCAAGGCCCGTGGCAAAGAGGACGGGTGATATGGTGATTGGAGGCACTATGAATGAGAATGGGGTCATGCATGTTAAGGTGACAAGAGTTGGATCCGAGAGTGCTCTCTCCCAGATCGTTCGACTTGTTGAGTCAGCCCAGATGGCTAAAGCTCCGGTTCAAAAACTTGCAGATCATATTTCTAAATACTTTGTTCCTCTGGTCATTGTGCTTTCTCTTTCAACATGGCTCTCCTGGTTTATAGCAGGAAAGTTACATGCATACCCGAAATCTTGGATACCATCCTCCATGAACTACTTTGAGCTTGCACTTCAGTTTGGGATTTCAGTCATGGTCATTGCCTGTCCTTGTGCTCTAGGCCTAGCCACTCCTACTGCTGTTATGGTTGGTACTGGAGTTGGTGCAACACAAGGTGTGTTGATCAAAGGGGGCCAAGCATTAGAAAGTGCAAACAAGGTGAATTGCATTGTGTTTGACAAGACAGGAACACTCACAGTTGGGAAGCCAGTGGTTGTAACAACAAAAATCTTCAAAAAGATGTCAATTAAAGATTTCTATGAATTTACTGCTGCAGCAGAGGTGAACAGCGAACATCCAATAGCTAAGGCCATTGTTGAGCACGCCAAGAAGATCACAGAAGAACAAAATCATTCCTGGCCAGAAGCACGCAACTTTGTTTCTGTTTCAGGCCATGGAGTAAAGGCCATTGTTCTAAACAAGGAAATATTGGTAGGGAATAAAAAGATGATGCTGGATCATAACATAACAATTTCAGCTGATGCTGAAGAAATACTAGCAGAAGCTGAAAGCCTGGCTCAAACTGGGATTTTAGTATCCTTGGATGGAGAAGTCGCTGGAGTTTTGGCTGTATCTGATCCATTGAAACCTGGCGCCAATGAAGTTATTTCCATTCTTAATTCCATGAAAATTAAGAGCATCATGGTGACAGGTGATAACTGGGGTACTGCCAATTCCATAGCCAGACAAGCCGGTATTGAAACTGTCATAGCAGAGGCTCAACCTGAGACTAAAGCAACTAAAATAAAAGAACTGCAGGGTTGTGGGTATACGGTGGCAATGGTGGGAGATGGCATCAACGACTCACCAGCACTTGTGGCAGCTGATGTTGGGATGGCAATAGGCGCTGGCACAGACATAGCAATTGAAGCAGCAGACATCGTTCTGATGAAGAGCAACTTGGAGGATATAATCATTGCCATTGACCTTGCGAACAGAACCTTCTCTCGTATACGTCTAAACTACTTTTGGGCTTTGGGTTACAATATCTTAGCCATCCCAATTGCAGCGGGAATTCTTTACTCATCCACTAGATTTCGCTTACCACCATGGATTGCTGGAGCTGCAATGGCGGCCTCTTCTCTCAGTGTTGTTTGCTCATCCCTCTTGTTAAAGAATTACAAGAGACCTTCCAAGCTAAACAAGATGGAGATGAATGGTGTAAACATTCAATAA 2949 0.4398 MGKKLGGWECRSSLQCCGNLWPQARYPSMTAVEAGKTVVEGSETTVVLFSVIGMTCAACAGSVEKTIKRLPGIREAVVDVLNHKAQVLYFPSMVNEERIREAIEDAGFEAKVIEEDSNYTSTQICRIHIRGMTCTSCSSTIESALHSLRGVHKARVALTTEEAEVQYDPKILTHNHLMEAIQDTGFEAILISTGEHMSKIELKIDGIKNDQSLAAIQRSLHALPGVQTIDIYPDINKIAITYIPHMTGPRTFIEVIESTGSGCFKAVIFPNDEGREALRQQEINRYFMLFIWSLAFTIPVFFTSMVLMYIPGVKRVLDIKIVNMLTIGLLLRCNFATPVQFIIGRRFYVGAYKALRKGSANMDVLIALGTNAAYFYSLYVVERAVFSRHFKGNDFFETSSMLISFILLGKYLEVLAKGKTSQAIAKLMNLTPETATLLTQDDNGDVVSEKQIDSRLIQKDDVIKVVPGSKVASDGFVIWGQSHVNESMITGEARPVAKRTGDMVIGGTMNENGVMHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVIVLSLSTWLSWFIAGKLHAYPKSWIPSSMNYFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGQALESANKVNCIVFDKTGTLTVGKPVVVTTKIFKKMSIKDFYEFTAAAEVNSEHPIAKAIVEHAKKITEEQNHSWPEARNFVSVSGHGVKAIVLNKEILVGNKKMMLDHNITISADAEEILAEAESLAQTGILVSLDGEVAGVLAVSDPLKPGANEVISILNSMKIKSIMVTGDNWGTANSIARQAGIETVIAEAQPETKATKIKELQGCGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLANRTFSRIRLNYFWALGYNILAIPIAAGILYSSTRFRLPPWIAGAAMAASSLSVVCSSLLLKNYKRPSKLNKMEMNGVNIQ 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02572 982 CDD HMA 49 111 IPR006121 GO:0046872
Viun2g02572 982 Gene3D - 616 910 IPR023214 -
Viun2g02572 982 Pfam haloacid dehalogenase-like hydrolase 645 867 - -
Viun2g02572 982 FunFam Probable copper-transporting ATPase HMA5 763 910 - -
Viun2g02572 982 ProSitePatterns E1-E2 ATPases phosphorylation site. 651 657 IPR018303 -
Viun2g02572 982 PRINTS Copper-transporting ATPase signature 830 847 - -
Viun2g02572 982 PRINTS Copper-transporting ATPase signature 399 418 - -
Viun2g02572 982 PRINTS Copper-transporting ATPase signature 558 572 - -
Viun2g02572 982 PRINTS Copper-transporting ATPase signature 419 437 - -
Viun2g02572 982 PRINTS Copper-transporting ATPase signature 926 940 - -
Viun2g02572 982 PRINTS Copper-transporting ATPase signature 347 366 - -
Viun2g02572 982 FunFam Copper-transporting ATPase 1, putative 417 539 - -
Viun2g02572 982 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 19 980 - -
Viun2g02572 982 Gene3D - 122 194 - -
Viun2g02572 982 Gene3D - 45 117 - -
Viun2g02572 982 NCBIfam HAD-IC family P-type ATPase 402 935 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Viun2g02572 982 SUPERFAMILY Calcium ATPase, transmembrane domain M 400 642 IPR023298 -
Viun2g02572 982 SUPERFAMILY Calcium ATPase, transduction domain A 449 535 IPR008250 -
Viun2g02572 982 Gene3D - 198 260 - -
Viun2g02572 982 SFLD C1.7: P-type atpase like 631 904 - -
Viun2g02572 982 ProSiteProfiles Heavy-metal-associated domain profile. 198 264 IPR006121 GO:0046872
Viun2g02572 982 Gene3D - 656 732 IPR023299 GO:0000166
Viun2g02572 982 Gene3D - 733 784 IPR023299 GO:0000166
Viun2g02572 982 Pfam Heavy-metal-associated domain 127 187 IPR006121 GO:0046872
Viun2g02572 982 Pfam Heavy-metal-associated domain 49 109 IPR006121 GO:0046872
Viun2g02572 982 ProSitePatterns Heavy-metal-associated domain. 51 80 IPR017969 GO:0046872
Viun2g02572 982 SFLD p-type atpase 631 904 IPR044492 -
Viun2g02572 982 CDD HMA 129 188 IPR006121 GO:0046872
Viun2g02572 982 ProSiteProfiles Heavy-metal-associated domain profile. 45 111 IPR006121 GO:0046872
Viun2g02572 982 SUPERFAMILY HMA, heavy metal-associated domain 193 263 IPR036163 GO:0046872
Viun2g02572 982 NCBIfam copper ion binding protein 127 188 IPR006122 GO:0005507
Viun2g02572 982 NCBIfam copper ion binding protein 49 110 IPR006122 GO:0005507
Viun2g02572 982 Pfam E1-E2 ATPase 430 627 - -
Viun2g02572 982 Gene3D - 417 539 - -
Viun2g02572 982 FunFam Copper-transporting ATPase HMA5 44 115 - -
Viun2g02572 982 SUPERFAMILY HMA, heavy metal-associated domain 41 116 IPR036163 GO:0046872
Viun2g02572 982 FunFam ATPase copper transporting beta 120 193 - -
Viun2g02572 982 CDD P-type_ATPase_Cu-like 290 949 - -
Viun2g02572 982 PRINTS P-type cation-transporting ATPase superfamily signature 800 810 - -
Viun2g02572 982 PRINTS P-type cation-transporting ATPase superfamily signature 876 888 - -
Viun2g02572 982 PRINTS P-type cation-transporting ATPase superfamily signature 649 663 - -
Viun2g02572 982 PRINTS P-type cation-transporting ATPase superfamily signature 778 789 - -
Viun2g02572 982 PRINTS P-type cation-transporting ATPase superfamily signature 853 872 - -
Viun2g02572 982 PRINTS P-type cation-transporting ATPase superfamily signature 485 499 - -
Viun2g02572 982 ProSiteProfiles Heavy-metal-associated domain profile. 123 189 IPR006121 GO:0046872
Viun2g02572 982 NCBIfam heavy metal translocating P-type ATPase 362 962 IPR027256 GO:0006812|GO:0016020|GO:0019829
Viun2g02572 982 SUPERFAMILY HMA, heavy metal-associated domain 121 195 IPR036163 GO:0046872
Viun2g02572 982 ProSitePatterns Heavy-metal-associated domain. 129 158 IPR017969 GO:0046872
Viun2g02572 982 PRINTS Copper-transporting ATPase 1 signature 101 121 - -
Viun2g02572 982 PRINTS Copper-transporting ATPase 1 signature 46 71 - -
Viun2g02572 982 PRINTS Copper-transporting ATPase 1 signature 72 95 - -
Viun2g02572 982 PRINTS Copper-transporting ATPase 1 signature 147 168 - -
Viun2g02572 982 SUPERFAMILY HAD-like 648 959 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02572 Viun-Chr2 31760972 31767856 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02572 48 982 Primary Pumps ATPases AT1G63440 71.489 0.0 1404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02572 K17686 - gmx:100817431 1655.19