Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02566 ATGAAGCCTCGTACTTCATTATGGCTTCTCTCTTTGATTTACACGCTCTCTTTTGTGGCTTCTGACACTGTGCCCTCTAATGAAGTTTGGGCGCTTAGGAGCTTCAAAGAAGCTGTTTATGAAGACCTATATCAAGTTTTGTCCGATTGGGATACGGTAGAAGCAGATCCTTGTAACTGGTTTGGGGTCACTTGCACTATGGTGCGAGATCATGTCATCAAGCTAAACATATCAGGTTCATCATTAAAGGGGTTTCTTGCACCAGAGTTGGGGCAACTCACCTACTTGCAAGAACTAATTTTGCACGGAAACAATCTCATTGGAACAATACCTAGAGAGTTGGGCGAGTTGAAATATCTCAGGGTGTTTGATCTAGGAATGAATCAGTTAACAGGACCAATTCCTCCAGAGTTTGGAAATCTAACTCAAGTTGTGAAAATAAACTTGCAGTCCAACGGGTTGACTGGTAGGCTACCTCCAGAGCTTGGAAACTTGAGATTCCTTCAAGAACTTCGGTTGGATAGGAATAGACTTCAAGGACCTATTCCCGCTGGTGGTAGCTCAAATTTTGCTTCATACATGCATGGGATGTATGTTTCCAAGGAGAATGTAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTAGCAGACTTCTCATATAATTTTTTAGTTGGTAGCATACCCAAATGCTTGGAGTATCTTCCGAGGTTAAGCTTTCAAGGGAATTGCATCCAGAGCCAGGATATAAAGCAGCGACCTCGTATACAGTGTGCGGGTGCTTCTCCTGCCAGTGCCAAGAGCCAGCCAGTGGTGAATCCAAGTCACCAACCTACTGAATATGTGTCCAAGCATCACGGAGCGTCAAAACCTGTTTGGCTTTTGGCTCTAGAAATAGTAACTGGGACTATGGTGGGCTCTCTCTTTCTGGTTGCTGTTCTTGCTGCTTTTCAGAGATGTAACAAAAAATCATCTATCATCATTCCTTGGAAAAAATCTGGAAGCCAGAAAGATCATACGGCAGTATATATAGACCCTGAGATGTTGAAGGATGTGAGAAGGTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCGGACAGTGTGGTTTACAAGGGAACAATGAAAGGTGGGCCTGAGATTGCTGTGATTTCCCTCTGCATCAGGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTGGCGGACTTGGCAAGGTTAAATCATGAGAATATAGGAAAACTACTTGGTTACTGTAGAGAAGACGCTCCATTTATAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGACCACCTTCATTGTTATGAAGAAGGATGTCAATTTTCCTGGACACGGCGTATGAAGATTGCCATAGGCATTGCACGTGGACTCAAGTATTTGCATACCGAAGTGGAGCCTCCATTTACTATCTCAGAGCTGAATTCTAGCGCTGTATACCTTACAGAAGAATTTTCCCCTAAGGTGTGGTCACTGGCTAGTTCAAATCTTCAAATTTACCTGTTACAGTTGTGGTCATATCTTCTTGCAGTCAAGAATGAGCAGAAATAA 1617 0.4329 MKPRTSLWLLSLIYTLSFVASDTVPSNEVWALRSFKEAVYEDLYQVLSDWDTVEADPCNWFGVTCTMVRDHVIKLNISGSSLKGFLAPELGQLTYLQELILHGNNLIGTIPRELGELKYLRVFDLGMNQLTGPIPPEFGNLTQVVKINLQSNGLTGRLPPELGNLRFLQELRLDRNRLQGPIPAGGSSNFASYMHGMYVSKENVTGFCRSSQLKVADFSYNFLVGSIPKCLEYLPRLSFQGNCIQSQDIKQRPRIQCAGASPASAKSQPVVNPSHQPTEYVSKHHGASKPVWLLALEIVTGTMVGSLFLVAVLAAFQRCNKKSSIIIPWKKSGSQKDHTAVYIDPEMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIREEHWTGYLELYFQREVADLARLNHENIGKLLGYCREDAPFIRMLVFDYASNGTLHDHLHCYEEGCQFSWTRRMKIAIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKVWSLASSNLQIYLLQLWSYLLAVKNEQK 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02566 538 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 25 188 - -
Viun2g02566 538 Gene3D Ribonuclease Inhibitor 139 260 IPR032675 -
Viun2g02566 538 FunFam Inactive receptor-like serine/threonine-protein kinase 338 445 - -
Viun2g02566 538 Gene3D Ribonuclease Inhibitor 27 138 IPR032675 -
Viun2g02566 538 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Viun2g02566 538 SUPERFAMILY Protein kinase-like (PK-like) 342 511 IPR011009 -
Viun2g02566 538 Pfam Protein tyrosine and serine/threonine kinase 368 485 IPR001245 GO:0004672|GO:0006468
Viun2g02566 538 PANTHER PROTEIN MALE DISCOVERER 2 10 516 - -
Viun2g02566 538 SUPERFAMILY L domain-like 26 238 - -
Viun2g02566 538 Gene3D Transferase(Phosphotransferase) domain 1 446 521 - -
Viun2g02566 538 Gene3D Phosphorylase Kinase; domain 1 338 445 - -
Viun2g02566 538 ProSiteProfiles Protein kinase domain profile. 364 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02566 Viun-Chr2 31744462 31749285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02566 9 511 Receptor kinase-like Gene Family AT2G01210 28.470 6.25e-41 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Viun2g02566 PK_Tyr_Ser-Thr 9.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02566 - - gmx:100794714 956.436