Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02552 ATGATGGCGCCATTACCGGTGGAGCAAACCGGTGAATCAGCGCCGGCGGAGTCACAGAGATCTATTCCGACGCCGTTTCTGACGAAGACGTACCAGCTCGTGGATGATCCCTCCGCGGATGACCTAATTTCCTGGAACGAAGATGGCACCAGTTTCATAGTTTGGCGGCCTGCGGAATTCGCACGTGATTTGCTTCCCAAGTACTTCAAACACAACAACTTCTCCAGTTTTGTCCGTCAGCTAAACACCTATGGATTTCGGAAGGTTGTCCCTGACCGTTGGGAATTCGCTAACGACTGTTTCCGGCGAGGTGAGAGAACTCTGCTTCGGGACATACAACGCCGGAAAATATTACCGGTGCCACCAACTGCGCAACCTGCAGTAGCCACAGCCAATACTGTGACGGTTGCTGTGGCGGCACCGGCAATCAGAGCTGTGTCTCCGACGACTTCCGGCGACGAACAGGTACTATCCTCGAACTCATCTCCGATTGCTGGAAATAATAATAATACAGTGCACCGCACCACGAGTTGCACCACTGCGCCCGAGCTGTTAGAAGAAAATGAAAGGCTTAGAAAAGAGAACATGCAACTGAATCACGAGTTGAGTCAATTGAAGAGTTTGTGTAATAACATACTCGCTTTGATGACCAATTACGCTTCTGGTTTTAGCCGTCAGCAGTTAGAATCGTCCACTAGTGCTGTGAGGACCATGCCGGTGCCGGAAGGGAAGGCTTTGGAGCTTTTGCCTGCGAAGCATGTTTCTTCGGCTGATGACGCCATGCATGTCGGTAGCGCTGCCGGCTTTGCGCCGTGTACGACTGCGAATGCAGCGGAGGCAGAGGTTCCCAAGCTGTTTGGGGTTTCTATTGGTTTGAAACGGTGTAGGACAGAGTGCGAGACCGAACCGGAGGGAGAAGAACAGAATCAAATGCAAACGCGAGTTCAAACTCAGCCACAAACACAGACACAGTCCTCACAGGAACCAGATGGCGGGCCAGATGTGAAATCTGAACCGCTTGATGGAGATGAGTCGGATGATCAGGATCCTCGGTGGCTGGAGCTTGGGAAATAA 1074 0.5186 MMAPLPVEQTGESAPAESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTSFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFANDCFRRGERTLLRDIQRRKILPVPPTAQPAVATANTVTVAVAAPAIRAVSPTTSGDEQVLSSNSSPIAGNNNNTVHRTTSCTTAPELLEENERLRKENMQLNHELSQLKSLCNNILALMTNYASGFSRQQLESSTSAVRTMPVPEGKALELLPAKHVSSADDAMHVGSAAGFAPCTTANAAEAEVPKLFGVSIGLKRCRTECETEPEGEEQNQMQTRVQTQPQTQTQSSQEPDGGPDVKSEPLDGDESDDQDPRWLELGK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02552 357 Coils Coil 181 208 - -
Viun2g02552 357 Gene3D - 18 116 IPR036388 -
Viun2g02552 357 MobiDBLite consensus disorder prediction 151 175 - -
Viun2g02552 357 MobiDBLite consensus disorder prediction 306 331 - -
Viun2g02552 357 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02552 357 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02552 357 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02552 357 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 320 IPR027725 -
Viun2g02552 357 MobiDBLite consensus disorder prediction 301 357 - -
Viun2g02552 357 MobiDBLite consensus disorder prediction 1 21 - -
Viun2g02552 357 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02552 357 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02552 357 FunFam Heat stress transcription factor B-4 18 116 - -
Viun2g02552 357 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Viun2g02552 357 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02552 Viun-Chr2 31670374 31672504 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02552 17 357 HSF AT4G11660 49.575 2.80e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Viun2g02552 HSF_DNA-bind 1.2e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02552 K09419 - gmx:100791020 548.895