Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02545 ATGCCGACAACAAGGTCTCCGAGCCCTTCTTCTGAGGACATCGTCGATTCGACGCCGCTTCTGGCCAATTCTGGCGGCTCCTCCTCAGAGGAGCTTACCACCGGGCGTCGATTTGCTCGGCGGCAGAGGCTACGGCAGGCGGCGAGGTTCCTCCGGCAGGCGAGCGGGCGCAGAATGATGCGAGAGCCGTCGATGCTGGTCCGGGAGGCGGCGGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCGAAGCCGGTGGTTGTTCTGGACGTCGTTTGGAACTTCGCGTTCGTGGTTGTGGCGGGGACCGTGTTGGTTTTGAGCGCGAGCGAAGCGCCGGGGATGCCTCTGAGGTTGTGGATTTTGGGGTACGCTATGCAATGCGTTCTTCACATGGTTTGCGTTTGCGTAGAGTATAGGAGAAGGAGGAGGAACCAACGCGCCACCTCGTCGGTTTCAGCGCAGGACAGAGTTGGGAGCAGCAGTGGAAATTTGAGTTCATCTTCGAGGGAGGGTTCTGCTTCTGGCTCTGCGCAGTATGTGTCGTTGGGGCAACTCGATGAGGAGGGTACCAGTGTTGCAAAGCATTTGGAATCAGCCAATACAATGTTTTCATTTGTTTGGTGGATTATTGGATTCTACTGGGTATCAGCCGGTGGTCAAGAATTAGCCCAAGATTCTCCCCAGCTTTACTGGCTATGCATAATTTTCCTGGGTTTTGATGTTTTCTTTGTTGTTTTCTGTGTTGCACTGGCGTGTATCATTGGTATCGCTGTTTGCTGTTGCCTTCCATGTATCATTGCACTTCTATACGCAGTTGCAGACCAGGAAGGAGCATCAAAGGAAGACATTGAGCAGTTGTCAAAATTTAAATTCAGGAGAATTCAAAGCAATGAGAAACTTACCGGAACTATACAGGGTCCTGTTGGAGGAATAATGACTGAATGCCACGCTGAGTCACCTATGGAACATGCTCTTGCCGAGGAGGATGCGGAATGTTGCATCTGCCTTTCCTCTTATGACGATGGGGTTGAGTTAAGAGAACTTCCTTGTGGTCACCATTTTCACTGTGTCTGTGTGGATAAATGGCTGTATATTAATGCCACTTGCCCTCTCTGCAAGTATAACATCTTAAAAAGTAGCAACCTTAGTCAAGAGGAAGTGTAG 1173 0.5107 MPTTRSPSPSSEDIVDSTPLLANSGGSSSEELTTGRRFARRQRLRQAARFLRQASGRRMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDVVWNFAFVVVAGTVLVLSASEAPGMPLRLWILGYAMQCVLHMVCVCVEYRRRRRNQRATSSVSAQDRVGSSSGNLSSSSREGSASGSAQYVSLGQLDEEGTSVAKHLESANTMFSFVWWIIGFYWVSAGGQELAQDSPQLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFRRIQSNEKLTGTIQGPVGGIMTECHAESPMEHALAEEDAECCICLSSYDDGVELRELPCGHHFHCVCVDKWLYINATCPLCKYNILKSSNLSQEEV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02545 390 SMART ring_2 335 375 IPR001841 -
Viun2g02545 390 MobiDBLite consensus disorder prediction 150 175 - -
Viun2g02545 390 MobiDBLite consensus disorder prediction 1 36 - -
Viun2g02545 390 MobiDBLite consensus disorder prediction 1 33 - -
Viun2g02545 390 ProSiteProfiles Zinc finger RING-type profile. 335 376 IPR001841 -
Viun2g02545 390 FunFam E3 ubiquitin-protein ligase At1g12760 321 386 - -
Viun2g02545 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 389 IPR013083 -
Viun2g02545 390 PANTHER TARGET OF ERK KINASE MPK-1 54 381 - -
Viun2g02545 390 SUPERFAMILY RING/U-box 324 382 - -
Viun2g02545 390 Pfam Ring finger domain 334 376 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02545 Viun-Chr2 31652445 31663240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02545 24 383 C3H Transcription Factor Family AT1G68070 49.862 3.04e-117 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02545 - - gmx:100790497 640.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g04277 3 50528258 50532875 Viun2g02545 2 31652445 31663240 PCT