Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02544 ATGGGTAAGGCATCCAAATGGTTTCGCTCCCTTCTTGCTCTCAAAAGACCAGACTCGCCGTCCGCCGCCGCTCCCAAGGAGAAACGACGGTGGAGCTTCGTCAAATCCTACAGAGAAAAGGACCATTCCGCCGTCGACCACCACGCACCACCCGTCCACTCCTCGGTACACGCGGAAAGCGCTGATCCCAACCTTCCAGCACTCACCGCCGTCACCGTCGTCGGAGGATTTACCCGAGAAGAATCCGCAGCCGTTAAGATTCAAGCCGCGTTTCGAGGCTCTTTGGCAAGGAAAGCCCTTAGAGCGTTAAAAGGATTGGTGAAGCTACAGGCGTTAGTGAGAGGTGAGATTGAGAGAAAGCGAACATCAGAATGGCTTCGAAGGGTCCAAACACTCTTACGTATTCAGGCCCAGGCCCAATTCCGTGCTGGGCGGGCCCAAATTTTGCACTCACCTTATCGGAATGCAAACCCATCCACTGCGTACCTCCATGGATCACCAGACAAATCTGAAAGCCCCATCAGATCCGAGAGCATGAAATATGATCACTCACCATCATTACTCAAGAGAAACAGTTCAAAGTCCCGCATGCAGATGAATGTTAATGAAGAGAAATCATGGCATGAACGAAGATGGTGGTCAAGAGGTTTTAGCCTGGACGAAGAAAGATGTGTGAGGATTCTAGAAAACGATTCTGGAAAAGCACACATGACATCAAAGGGTAGAAGCCATGGTTTGGTCGGTGAAGGTCAGTGTTACAGCCCTCTAAAATGGAACGAGGTTGAGGAAAACTCATGGTGTGGTGGTGAGAACAGTCCTCGTACTTTATCCTCCTCGTCTAAAAATGGTGTCTCCAAACGAAGCCCTTTTACTCCTACCAAGAGTGATGGGTCAAAGAGCCATGGAAGTGGTTATTCTGAACCTGATTATCCGAGTTACATGGCATACACTGAATCCTCAATGGCAAAGGTGAGATCTGTGAGTGTTCCAAAGCAGAGACCCACCCAATACCAGAGGTCAACTTCATCTTCTAACAGCTACTCGCTTCATCATCATGGATTTCAATCTGGTGACTCAAAGTTGGCCACGCAAAGATCACACGCAAACTTCACTCATAAGGCTTACCCTGGTTCTGGTCGTTTGGACAAGCTTGGGTAA 1158 0.4914 MGKASKWFRSLLALKRPDSPSAAAPKEKRRWSFVKSYREKDHSAVDHHAPPVHSSVHAESADPNLPALTAVTVVGGFTREESAAVKIQAAFRGSLARKALRALKGLVKLQALVRGEIERKRTSEWLRRVQTLLRIQAQAQFRAGRAQILHSPYRNANPSTAYLHGSPDKSESPIRSESMKYDHSPSLLKRNSSKSRMQMNVNEEKSWHERRWWSRGFSLDEERCVRILENDSGKAHMTSKGRSHGLVGEGQCYSPLKWNEVEENSWCGGENSPRTLSSSSKNGVSKRSPFTPTKSDGSKSHGSGYSEPDYPSYMAYTESSMAKVRSVSVPKQRPTQYQRSTSSSNSYSLHHHGFQSGDSKLATQRSHANFTHKAYPGSGRLDKLG 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02544 385 PANTHER IQ-DOMAIN 5-RELATED 1 350 - -
Viun2g02544 385 Gene3D - 77 130 - -
Viun2g02544 385 MobiDBLite consensus disorder prediction 324 385 - -
Viun2g02544 385 ProSiteProfiles IQ motif profile. 80 108 IPR000048 GO:0005515
Viun2g02544 385 ProSiteProfiles IQ motif profile. 104 131 IPR000048 GO:0005515
Viun2g02544 385 MobiDBLite consensus disorder prediction 267 302 - -
Viun2g02544 385 MobiDBLite consensus disorder prediction 158 188 - -
Viun2g02544 385 Pfam IQ calmodulin-binding motif 82 101 IPR000048 GO:0005515
Viun2g02544 385 Pfam Protein of unknown function (DUF4005) 272 352 IPR025064 -
Viun2g02544 385 SMART iq_5 79 101 IPR000048 GO:0005515
Viun2g02544 385 MobiDBLite consensus disorder prediction 267 308 - -
Viun2g02544 385 MobiDBLite consensus disorder prediction 324 371 - -
Viun2g02544 385 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02544 Viun-Chr2 31645125 31648052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02544 1 56 IQD Protein Family AT4G23060 44.118 1.15e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02544 - - pvu:PHAVU_002G154900g 545.814