Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02543 ATGGATCTGTATTTGGGGGAAAGTGATAAGAAGCTGATTTTTCACAAAGCTAATTGGATCCGGAATCACACCGCCGAAACTCTGTATGGATGGAAAGACTACGAAATCATTGGCCAAAGAGTAACTAAAGTCCTAATTGCTGAGGAAAATTATGTATCTCTACAAAACATTCTGGAAAGGGTGGTTTCCGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAGTTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGGTGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATCTACAAATTCAGAAAATCAAACATACAAGTCTGCTAGCAATGGCCAACCTGGAGTACGGAGGTTAAACTTTAAAAGAATTCAGTGGCCACCACGACCAACCATTGCACCAATGCCACAGATTGCTTCATCTGTTTCTAATCTGGCATCAAAGCTTCTCCCACTGCTGCATAGTTCCGATGACACAGTTTCCAAGAATACTTCAACAGATGGTGATGAAAAGATGGAGAAGCGTGGCATATATGAAACAAAACCTTATTCCAGACATTTCCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGAGTCGACTGCAGAATTTGGCCAACCTTCTAAAATTGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAAAATAAGAAATAATTGTGCAGATGATAATTCAGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAATGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACAAAATCTTCAGAAATGTAGTTCTTCACTTGCACTGAAGAGAGCAGATACAACAGCGTGTGCATCTAGAGCTTCTACTGTTTCCAAAGATTATTCTGAGGCTACGACTATGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGGGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCATGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCAAACTCTGTTTCAGAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAAGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGATTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTACTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATCTACATAGGAACAAACAGACATTAGACATCAGAAGACGTCTAAGGATGGCTCTTGATGTAGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTTGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTGTCTAGGTTGAAGGATGCAACTTTATTGAATACAAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAACGAACCTTCAAATGAGAAGTCTGATGTATTCAGTTTCGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCGTGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATAGACAGACGACTGGACCTTCCGGAAGACCTTGATCCCCATGTTGCGTCAATCATCCATGATTGCTGGCGAAGTGATCCAGATCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACATTATTCCTTGTCAACAGAGTAACAGCAGTGTCAATTAGGAGAATTGCAGAATCATAA 1926 0.4076 MDLYLGESDKKLIFHKANWIRNHTAETLYGWKDYEIIGQRVTKVLIAEENYVSLQNILERVVSGVPWSGKFPFKKKSGEVVMALVTKTPLYEGGELVGVITVSSDAAILKSTNSENQTYKSASNGQPGVRRLNFKRIQWPPRPTIAPMPQIASSVSNLASKLLPLLHSSDDTVSKNTSTDGDEKMEKRGIYETKPYSRHFRKENTIVTEASEENESTAEFGQPSKIAAKLQTGVRAKYGKDNGKIRNNCADDNSGSNRMNYENDSSGGLVPLNGYQDVVNGADKEQNLQKCSSSLALKRADTTACASRASTVSKDYSEATTMVTGDEVQKQQEGSQLPSSRESTGSHESLSGKGDYESNSVSECEIHWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHRNKQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFIDRRLDLPEDLDPHVASIIHDCWRSDPDRRPSFEELIQRTLFLVNRVTAVSIRRIAES 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02543 641 ProSitePatterns Protein kinases ATP-binding region signature. 377 398 IPR017441 GO:0005524
Viun2g02543 641 Gene3D Phosphorylase Kinase; domain 1 364 448 - -
Viun2g02543 641 SUPERFAMILY Protein kinase-like (PK-like) 358 630 IPR011009 -
Viun2g02543 641 FunFam Serine/threonine-protein kinase isoform 1 362 449 - -
Viun2g02543 641 ProSiteProfiles PAS repeat profile. 22 65 IPR000014 -
Viun2g02543 641 ProSiteProfiles Protein kinase domain profile. 371 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02543 641 CDD STKc_MAP3K-like 377 622 - -
Viun2g02543 641 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Viun2g02543 641 NCBIfam PAS domain S-box protein 22 105 IPR000014 -
Viun2g02543 641 MobiDBLite consensus disorder prediction 317 358 - -
Viun2g02543 641 Pfam Protein tyrosine and serine/threonine kinase 371 621 IPR001245 GO:0004672|GO:0006468
Viun2g02543 641 FunFam PAS domain-containing protein tyrosine kinase family protein 449 637 - -
Viun2g02543 641 SMART serkin_6 371 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02543 641 SUPERFAMILY PYP-like sensor domain (PAS domain) 22 105 IPR035965 -
Viun2g02543 641 CDD PAS 22 105 IPR000014 -
Viun2g02543 641 Gene3D Transferase(Phosphotransferase) domain 1 450 631 - -
Viun2g02543 641 Gene3D PAS domain 20 110 - -
Viun2g02543 641 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 180 624 - -
Viun2g02543 641 PRINTS Tyrosine kinase catalytic domain signature 594 616 IPR001245 GO:0004672|GO:0006468
Viun2g02543 641 PRINTS Tyrosine kinase catalytic domain signature 484 502 IPR001245 GO:0004672|GO:0006468
Viun2g02543 641 PRINTS Tyrosine kinase catalytic domain signature 445 458 IPR001245 GO:0004672|GO:0006468
Viun2g02543 641 PRINTS Tyrosine kinase catalytic domain signature 531 541 IPR001245 GO:0004672|GO:0006468
Viun2g02543 641 PRINTS Tyrosine kinase catalytic domain signature 550 572 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02543 Viun-Chr2 31627892 31633876 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02543 19 629 MAP Kinase Kinase Kinase AT4G23050 47.799 4.65e-180 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Viun2g02543 PK_Tyr_Ser-Thr 8.5e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02543 - - vra:106777922 1158.28