Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02542 ATGCGCATTGCGCACCTCACAACCAGAGTTCTGTCCAATTCAATGAACGGCGGCGAGGAGAGAGAGACAACAGCGTTCCGAGCTCTGGCGGATCGGTGCCGGAGCCTCGAGGAGAAGCAGGCCAAGCTGAGGGAGGAATTCGATGAGCTACTGCAAAAGAAGCTCACAGTCAGGCACGATAAGGATAACGAGGTCATTGCTGATTCAACAACCTTCGGTTTTCTCTCCCGTTACTTCTTCTCCGGAAGTCCGTACGCAACCGTGCTGAAATGTATGGGCCACGCTGTTCACGTCGTCAGAGTTCCCTCCGCTGAGATCGTATACTGGAATCACACCGCCGAAACTCTGTATGGATGGAAAGACTACGAAATCATTGGCCAAAGAGTAACTAAAGTCCTAATTGCTGAGGAAAATTATGTATCTCTACAAAACATTCTGGAAAGGGTGGTTTCCGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAGTTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGGTGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATCTACAAATTCAGAAAATCAAACATACAAGTCTGCTAGCAATGGCCAACCTGGAGTACGGAGGTTAAACTTTAAAAGAATTCAGTGGCCACCACGACCAACCATTGCACCAATGCCACAGATTGCTTCATCTGTTTCTAATCTGGCATCAAAGCTTCTCCCACTGCTGCATAGTTCCGATGACACAGTTTCCAAGAATACTTCAACAGATGGTGATGAAAAGATGGAGAAGCGTGGCATATATGAAACAAAACCTTATTCCAGACATTTCCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGAGTCGACTGCAGAATTTGGCCAACCTTCTAAAATTGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAAAATAAGAAATAATTGTGCAGATGATAATTCAGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAATGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACAAAATCTTCAGAAATGTAGTTCTTCACTTGCACTGAAGAGAGCAGATACAACAGCGTGTGCATCTAGAGCTTCTACTGTTTCCAAAGATTATTCTGGAGATGAAGTACAAAAGCAGCAAGAAGGGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCATGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCAAACTCTGTTTCAGAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAAGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGATTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTACTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATCTACATAGGAACAAACAGACATTAGACATCAGAAGACGTCTAAGGATGGCTCTTGATGTAGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTTGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTGTCTAGGTTGAAGGATGCAACTTTATTGAATACAAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAACGAACCTTCAAATGAGAAGTCTGATGTATTCAGTTTCGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCGTGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATAGACAGACGACTGGACCTTCCGGAAGACCTTGATCCCCATGTTGCGTCAATCATCCATGATTGCTGGCGAAGTGATCCAGATCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACATTATTCCTTGTCAACAGAGTAACAGCAGTGTCAATTAGGAGAATTGCAGAATCATAA 2169 0.4269 MRIAHLTTRVLSNSMNGGEERETTAFRALADRCRSLEEKQAKLREEFDELLQKKLTVRHDKDNEVIADSTTFGFLSRYFFSGSPYATVLKCMGHAVHVVRVPSAEIVYWNHTAETLYGWKDYEIIGQRVTKVLIAEENYVSLQNILERVVSGVPWSGKFPFKKKSGEVVMALVTKTPLYEGGELVGVITVSSDAAILKSTNSENQTYKSASNGQPGVRRLNFKRIQWPPRPTIAPMPQIASSVSNLASKLLPLLHSSDDTVSKNTSTDGDEKMEKRGIYETKPYSRHFRKENTIVTEASEENESTAEFGQPSKIAAKLQTGVRAKYGKDNGKIRNNCADDNSGSNRMNYENDSSGGLVPLNGYQDVVNGADKEQNLQKCSSSLALKRADTTACASRASTVSKDYSGDEVQKQQEGSQLPSSRESTGSHESLSGKGDYESNSVSECEIHWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHRNKQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFIDRRLDLPEDLDPHVASIIHDCWRSDPDRRPSFEELIQRTLFLVNRVTAVSIRRIAES 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02542 722 NCBIfam PAS domain S-box protein 103 193 IPR000014 -
Viun2g02542 722 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 266 705 - -
Viun2g02542 722 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Viun2g02542 722 Gene3D Phosphorylase Kinase; domain 1 445 529 - -
Viun2g02542 722 MobiDBLite consensus disorder prediction 336 356 - -
Viun2g02542 722 ProSiteProfiles PAS repeat profile. 103 153 IPR000014 -
Viun2g02542 722 SMART serkin_6 452 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02542 722 Coils Coil 26 53 - -
Viun2g02542 722 SUPERFAMILY PYP-like sensor domain (PAS domain) 103 193 IPR035965 -
Viun2g02542 722 Pfam Protein tyrosine and serine/threonine kinase 452 702 IPR001245 GO:0004672|GO:0006468
Viun2g02542 722 SUPERFAMILY Protein kinase-like (PK-like) 439 711 IPR011009 -
Viun2g02542 722 CDD PAS 105 193 IPR000014 -
Viun2g02542 722 Gene3D PAS domain 96 198 - -
Viun2g02542 722 ProSiteProfiles Protein kinase domain profile. 452 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02542 722 PRINTS Tyrosine kinase catalytic domain signature 631 653 IPR001245 GO:0004672|GO:0006468
Viun2g02542 722 PRINTS Tyrosine kinase catalytic domain signature 565 583 IPR001245 GO:0004672|GO:0006468
Viun2g02542 722 PRINTS Tyrosine kinase catalytic domain signature 675 697 IPR001245 GO:0004672|GO:0006468
Viun2g02542 722 PRINTS Tyrosine kinase catalytic domain signature 526 539 IPR001245 GO:0004672|GO:0006468
Viun2g02542 722 PRINTS Tyrosine kinase catalytic domain signature 612 622 IPR001245 GO:0004672|GO:0006468
Viun2g02542 722 FunFam PAS domain-containing protein tyrosine kinase family protein 530 718 - -
Viun2g02542 722 Pfam PAS fold 98 189 IPR013767 GO:0006355
Viun2g02542 722 MobiDBLite consensus disorder prediction 397 439 - -
Viun2g02542 722 FunFam Serine/threonine-protein kinase isoform 1 443 530 - -
Viun2g02542 722 ProSitePatterns Protein kinases ATP-binding region signature. 458 479 IPR017441 GO:0005524
Viun2g02542 722 CDD STKc_MAP3K-like 458 703 - -
Viun2g02542 722 Gene3D Transferase(Phosphotransferase) domain 1 531 712 - -
Viun2g02542 722 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02542 Viun-Chr2 31627350 31633876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02542 17 710 MAP Kinase Kinase Kinase AT4G23050 45.296 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Viun2g02542 PK_Tyr_Ser-Thr 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02542 - - vra:106777922 1311.21