Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02541 ATGCGCATTGCGCACCTCACAACCAGAGTTCTGTCCAATTCAATGAACGGCGGCGAGGAGAGAGAGACAACAGCGTTCCGAGCTCTGGCGGATCGGTGCCGGAGCCTCGAGGAGAAGCAGGCCAAGCTGAGGGAGGAATTCGATGAGCTACTGCAAAAGAAGCTCACAGTCAGGCACGATAAGGATAACGAGGTCATTGCTGATTCAACAACCTTCGGTTTTCTCTCCCGTTACTTCTTCTCCGGAAGTCCGTACGCAACCGTGCTGAAATGTATGGGCCACGCTGTTCACGTCGTCAGAGTTCCCTCCGCTGAGATCGTATACTGGAATCACACCGCCGAAACTCTGTATGGATGGAAAGACTACGAAATCATTGGCCAAAGAGTAACTAAAGTCCTAATTGCTGAGGAAAATTATGTATCTCTACAAAACATTCTGGAAAGGGTGGTTTCCGGAGTTCCATGGTCTGGGAAGTTTCCTTTCAAAAAGAAATCTGGTGAAGTAGTTATGGCATTGGTAACAAAAACTCCTCTTTATGAGGGTGGTGAGCTTGTTGGTGTTATAACTGTTTCAAGTGATGCGGCTATATTAAAATCTACAAATTCAGAAAATCAAACATACAAGTCTGCTAGCAATGGCCAACCTGGAGTACGGAGGTTAAACTTTAAAAGAATTCAGTGGCCACCACGACCAACCATTGCACCAATGCCACAGATTGCTTCATCTGTTTCTAATCTGGCATCAAAGCTTCTCCCACTGCTGCATAGTTCCGATGACACAGTTTCCAAGAATACTTCAACAGATGGTGATGAAAAGATGGAGAAGCGTGGCATATATGAAACAAAACCTTATTCCAGACATTTCCGTAAAGAAAACACAATTGTCACGGAGGCCTCTGAGGAGAATGAGTCGACTGCAGAATTTGGCCAACCTTCTAAAATTGCAGCCAAGCTTCAAACTGGGGTACGTGCAAAATATGGGAAGGATAATGGAAAAATAAGAAATAATTGTGCAGATGATAATTCAGGAAGCAATAGAATGAATTATGAAAATGATTCATCTGGAGGTTTAGTTCCATTAAATGGATACCAGGATGTTGTTAATGGAGCAGATAAAGAACAAAATCTTCAGAAATGTAGTTCTTCACTTGCACTGAAGAGAGCAGATACAACAGCGTGTGCATCTAGAGCTTCTACTGTTTCCAAAGATTATTCTGAGGCTACGACTATGGTGACAGGAGATGAAGTACAAAAGCAGCAAGAAGGGTCGCAACTGCCAAGTTCGAGGGAGAGTACAGGCAGCCATGAAAGTTTGTCGGGCAAAGGGGATTATGAGTCAAACTCTGTTTCAGAGTGTGAAATCCATTGGGAAGACCTTCAATTAAGAGAAGAGATTGGACAAGGTTCTTATGCAACTGTTTATCATGGAATTTGGAATGGATCGGATGTTGCAGTCAAGGTTTATTTTGGGAACGGATACACAGAGGAGACTTTACAAGATTACAGAAAAGAGATTGATATAATGAAGAGATTGAGACACCCTAATGTATTACTTTTCATGGGAGCAGTATATTCACAGGAAAGGCTTGCCATTGTTACAGAGTTATTACCTAGGGGAAGCCTTTTCAAAAATCTACATAGGAACAAACAGACATTAGACATCAGAAGACGTCTAAGGATGGCTCTTGATGTAGCTAGAGGAATGAATTATCTTCATCACAGAAATCCACCAATTGTGCATCGAGATCTGAAGTCTTCCAACCTGCTTGTAGATAAAAACTGGACTGTAAAGGTTGGAGATTTTGGCCTGTCTAGGTTGAAGGATGCAACTTTATTGAATACAAAATCTGGGAGAGGCACCCCTCAATGGATGGCCCCTGAAGTCCTTAGAAACGAACCTTCAAATGAGAAGTCTGATGTATTCAGTTTCGGTGTCATCCTCTGGGAACTAATGACTCAATCTATTCCGTGGAAAAATTTGAATTCCTTACAGGTTGTTGGAGTCGTAGGCTTTATAGACAGACGACTGGACCTTCCGGAAGACCTTGATCCCCATGTTGCGTCAATCATCCATGATTGCTGGCGAAGTGATCCAGATCGACGCCCATCATTTGAAGAGCTGATCCAGAGAACATTATTCCTTGTCAACAGAGTAACAGCAGTGTCAATTAGGAGAATTGCAGAATCATAA 2190 0.4279 MRIAHLTTRVLSNSMNGGEERETTAFRALADRCRSLEEKQAKLREEFDELLQKKLTVRHDKDNEVIADSTTFGFLSRYFFSGSPYATVLKCMGHAVHVVRVPSAEIVYWNHTAETLYGWKDYEIIGQRVTKVLIAEENYVSLQNILERVVSGVPWSGKFPFKKKSGEVVMALVTKTPLYEGGELVGVITVSSDAAILKSTNSENQTYKSASNGQPGVRRLNFKRIQWPPRPTIAPMPQIASSVSNLASKLLPLLHSSDDTVSKNTSTDGDEKMEKRGIYETKPYSRHFRKENTIVTEASEENESTAEFGQPSKIAAKLQTGVRAKYGKDNGKIRNNCADDNSGSNRMNYENDSSGGLVPLNGYQDVVNGADKEQNLQKCSSSLALKRADTTACASRASTVSKDYSEATTMVTGDEVQKQQEGSQLPSSRESTGSHESLSGKGDYESNSVSECEIHWEDLQLREEIGQGSYATVYHGIWNGSDVAVKVYFGNGYTEETLQDYRKEIDIMKRLRHPNVLLFMGAVYSQERLAIVTELLPRGSLFKNLHRNKQTLDIRRRLRMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDFGLSRLKDATLLNTKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMTQSIPWKNLNSLQVVGVVGFIDRRLDLPEDLDPHVASIIHDCWRSDPDRRPSFEELIQRTLFLVNRVTAVSIRRIAES 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02541 729 SUPERFAMILY Protein kinase-like (PK-like) 446 718 IPR011009 -
Viun2g02541 729 NCBIfam PAS domain S-box protein 103 193 IPR000014 -
Viun2g02541 729 Gene3D Phosphorylase Kinase; domain 1 452 536 - -
Viun2g02541 729 ProSitePatterns Protein kinases ATP-binding region signature. 465 486 IPR017441 GO:0005524
Viun2g02541 729 MobiDBLite consensus disorder prediction 405 446 - -
Viun2g02541 729 Pfam Protein tyrosine and serine/threonine kinase 459 709 IPR001245 GO:0004672|GO:0006468
Viun2g02541 729 ProSiteProfiles PAS repeat profile. 103 153 IPR000014 -
Viun2g02541 729 FunFam PAS domain-containing protein tyrosine kinase family protein 537 725 - -
Viun2g02541 729 SMART serkin_6 459 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02541 729 Coils Coil 26 53 - -
Viun2g02541 729 SUPERFAMILY PYP-like sensor domain (PAS domain) 103 193 IPR035965 -
Viun2g02541 729 ProSiteProfiles Protein kinase domain profile. 459 714 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02541 729 CDD PAS 105 193 IPR000014 -
Viun2g02541 729 Gene3D Transferase(Phosphotransferase) domain 1 538 719 - -
Viun2g02541 729 Gene3D PAS domain 96 198 - -
Viun2g02541 729 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 268 712 - -
Viun2g02541 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 578 590 IPR008271 GO:0004672|GO:0006468
Viun2g02541 729 Pfam PAS fold 98 189 IPR013767 GO:0006355
Viun2g02541 729 FunFam Serine/threonine-protein kinase isoform 1 450 537 - -
Viun2g02541 729 PRINTS Tyrosine kinase catalytic domain signature 572 590 IPR001245 GO:0004672|GO:0006468
Viun2g02541 729 PRINTS Tyrosine kinase catalytic domain signature 533 546 IPR001245 GO:0004672|GO:0006468
Viun2g02541 729 PRINTS Tyrosine kinase catalytic domain signature 619 629 IPR001245 GO:0004672|GO:0006468
Viun2g02541 729 PRINTS Tyrosine kinase catalytic domain signature 638 660 IPR001245 GO:0004672|GO:0006468
Viun2g02541 729 PRINTS Tyrosine kinase catalytic domain signature 682 704 IPR001245 GO:0004672|GO:0006468
Viun2g02541 729 CDD STKc_MAP3K-like 465 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02541 Viun-Chr2 31627350 31633876 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02541 18 717 MAP Kinase Kinase Kinase AT4G23050 44.980 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Viun2g02541 PK_Tyr_Ser-Thr 1.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02541 - - vra:106777922 1330.85