Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02540 ATGGCTGCTTCAACAATGGCTCTCTCTTCACCGTCATTGGCGGGCCAAGCAATCAAGCTTTCCCCCTCCACCCCTGACCTTTTCGGTGGAAGGATTTCCATGAGGAAAACAACCTCTAAGTCTGTTTCCTCTGGAAGCCCATGGTACGGCCCGGACCGTGTTAAGTACTTGGGCCCATTCTCTGGTGAGGCACCATCGTACCTCACCGGTGAATTCCCAGGTGACTATGGCTGGGATACTGCTGGGCTCTCCGCTGACCCAGAGACTTTTGCCAAAAACCGTGAACTTGAAGTCATCCACTCCAGATGGGCCATGTTGGGAGCCTTGGGCTGTGTTTTCCCCGAACTCTTGTCCCGTAATGGTGTCAAGTTCGGCGAGGCTGTGTGGTTTAAGGCTGGCTCTCAGATATTCAGTGAGGGTGGGCTTGACTACTTGGGCAATCCAAACCTGGTCCACGCACAGAGCATCCTTGCTATCTGGGCCTCTCAAGTTATCTTAATGGGTGCCGTTGAGGGTTACCGTATTGCCGGTGGGCCTCTCGGTGAGGTGACTGACCCAATTTACCCAGGTGGAAGCTTCGACCCATTGGGCCTTGCTGATGACCCAGAGGCTTTCGCTGAGTTGAAGGTGAAAGAACTGAAAAACGGTAGATTAGCCATGTTCTCCATGTTCGGTTTCTTTGTTCAAGCGATTGTTACCGGAAAGGGACCCCTGGAAAACCTCGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCATATGCTACAAACTTTGTCCCTGGAAAGTGA 795 0.527 MAASTMALSSPSLAGQAIKLSPSTPDLFGGRISMRKTTSKSVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02540 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Viun2g02540 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 264 IPR001344 GO:0009765|GO:0016020
Viun2g02540 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
Viun2g02540 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Viun2g02540 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02540 Viun-Chr2 31619778 31620777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02540 1 264 Chloroplast and Mitochondria Gene Families AT2G34430 87.594 6.32e-172 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02540 K08912 - ccaj:109815895 521.931