Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02532 ATGGCTCCCTCACCCTCTTCCAAGAGGCACCCACTCTACCGCGGAATCCGTTCGCGGGGAAGAAAATGGGTCTCCGAAATCCGCGAACCGCGCAAGGCCTCCCGCATATGGCTCGGCACCTTCCCCACGCCGGAGATGGCCGCCGCCGCCTACGACGTCGCAGCATTGGCCTTGAAAGGCGACGGCGCCGTTCTCAACCTCCCTCACTCCGTTTCCAAGTATCAAATCCCTGCAACCAACTCTGCGGTGGATATACGTACTGCTGCCTCCGCTGCAGCCGCAATGGTGAAGGCTGAAACTGAAGCTTCCCACAACATTGCATCGCAAACTGAAGCTACCCACATTGATGCGTCACCATGGTGGTTTCAAAACGATTTCCTTGACGAGGAAGCCCTTTTCGGCATGCCAAGTCTTCTCGTTGACATGGCCGGGGGAATGCTTCTGTCGCCGCCCAGAATGACCTCGCCACCGTCCGATAACTCGCCGGAGAAACAAGGTGCAGAAACTTTGTGGAGTTATTTTTGA 525 0.5676 MAPSPSSKRHPLYRGIRSRGRKWVSEIREPRKASRIWLGTFPTPEMAAAAYDVAALALKGDGAVLNLPHSVSKYQIPATNSAVDIRTAASAAAAMVKAETEASHNIASQTEATHIDASPWWFQNDFLDEEALFGMPSLLVDMAGGMLLSPPRMTSPPSDNSPEKQGAETLWSYF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02532 174 Gene3D AP2/ERF domain 12 70 IPR036955 GO:0003700|GO:0006355
Viun2g02532 174 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 173 IPR045277 GO:0003700
Viun2g02532 174 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Viun2g02532 174 ProSiteProfiles AP2/ERF domain profile. 12 68 IPR001471 GO:0003700|GO:0006355
Viun2g02532 174 CDD AP2 11 70 IPR001471 GO:0003700|GO:0006355
Viun2g02532 174 MobiDBLite consensus disorder prediction 150 174 - -
Viun2g02532 174 SMART rav1_2 12 74 IPR001471 GO:0003700|GO:0006355
Viun2g02532 174 SUPERFAMILY DNA-binding domain 12 70 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02532 Viun-Chr2 31563202 31563773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02532 7 173 AP2-EREBP Transcription Factor Family AT5G52020 51.429 2.98e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g02532 AP2 1.3e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02532 - - gmx:100811020 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02532 2 31563202 31563773 Viun2g02532 2 31563202 31563773 ECH
Viun3g04263 3 50395045 50396050 Viun2g02532 2 31563202 31563773 PCT