Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02531 ATGGACATTTTCACATCTCCTCTCGACCACGACCCAGAAGCATCATGCGAAACAGATTCTCCGACAACTGTTCAGAGTAGTGGGTATTCAGACGAGGAAGTGATACTGGCGTCGTCGCGGCCCAAGAAGCGAGCGGGGAGAAGAGTGTTCAAGGAGACCAGACACCCCGTGTACCGGGGAGTGCGACGGAGGAACAACAACAAGTGGGTCTGCGAGATGCGGGTTCCCAACAACAACAACTCACGGATTTGGCTCGGCACCTACCCCACGCCGGAAATGGCGGCGCGGGCGCACGACGTTGCGGCCCTCGCGCTCAGGGGAAAGTCCGCCTGCCTGAATTTCGCCGACTCCGTGTGGCGCCTGGCGGTGCCTGACAGCACAGACGCGGAGGAGATACGGCGAGCGGCGGTGGAGGCTGCGGCGGCGTTTGTGGATGAAGAGGTGAGCCAACAGCAGAGGAGTGAAGAAATTGAAGAGCCACCGCGACTGCAACAAGAAGAGATGTCGGAAGAGTTGCATGATTTGCTTCTGCGAATGGCGAACGAGCCTTTGATGTCTCCTCCTCCTTGTGTGAGAGATGGTAGGGATTGGAATGACGTGGAGATATTTGATGCAGAGGTTTCACTGTGGAGCTTTTCAATTTGA 645 0.5674 MDIFTSPLDHDPEASCETDSPTTVQSSGYSDEEVILASSRPKKRAGRRVFKETRHPVYRGVRRRNNNKWVCEMRVPNNNNSRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSVWRLAVPDSTDAEEIRRAAVEAAAAFVDEEVSQQQRSEEIEEPPRLQQEEMSEELHDLLLRMANEPLMSPPPCVRDGRDWNDVEIFDAEVSLWSFSI 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02531 214 ProSiteProfiles AP2/ERF domain profile. 57 115 IPR001471 GO:0003700|GO:0006355
Viun2g02531 214 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 211 IPR045277 GO:0003700
Viun2g02531 214 CDD AP2 58 117 IPR001471 GO:0003700|GO:0006355
Viun2g02531 214 MobiDBLite consensus disorder prediction 17 32 - -
Viun2g02531 214 MobiDBLite consensus disorder prediction 1 32 - -
Viun2g02531 214 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Viun2g02531 214 PRINTS Ethylene responsive element binding protein signature 81 97 IPR001471 GO:0003700|GO:0006355
Viun2g02531 214 MobiDBLite consensus disorder prediction 149 168 - -
Viun2g02531 214 SMART rav1_2 57 121 IPR001471 GO:0003700|GO:0006355
Viun2g02531 214 SUPERFAMILY DNA-binding domain 57 117 IPR016177 GO:0003677
Viun2g02531 214 Pfam AP2 domain 56 107 IPR001471 GO:0003700|GO:0006355
Viun2g02531 214 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Viun2g02531 214 MobiDBLite consensus disorder prediction 147 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02531 Viun-Chr2 31546016 31546660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02531 31 212 AP2-EREBP Transcription Factor Family AT1G63030 52.973 3.43e-60 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g02531 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02531 - - gmx:100789097 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02531 2 31546016 31546660 Viun2g02531 2 31546016 31546660 ECH
Viun3g04262 3 50354901 50355809 Viun2g02531 2 31546016 31546660 PCT