Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02499 ATGAGAAGACACCGTGCTATTCATCTCTCTCATGCTCTACTGTGCACCGTTTTTTGTTGTCTTGTGACAGCTTCTGCAGTGACTGAGAAGGAAATTTTGCTTGAATTCAAAGGTAACATCACGGACGATCCACGCGCCAGCTTGAGTTCGTGGGTTTCAAGTGGGAACCCGTGCAACGATTACAAAGGTGTTTCGTGTAACTCTGAAGGGTTTGTGGAGAGAATCGTGCTATGGAACACTAGCTTGGGAGGGGTGTTATCCTCGTCGCTTTCGGGGTTGAAGAGGTTGAGGATATTGACGTTGTTCGGAAACCGTCTCTCGGGTGGTATTCCAGAAGGTTATGGTGATCTTCACTCACTGTGGAAGATCAATTTGAGTTCCAATGCTTTATCTGGTTCGATCCCTGAATTCATTGGTGATTTGCCTAGCATTCGGTTTCTAGATTTATCCAAGAATGGCTTCACTGGGGAGATACCTTCGGCTTTGTTTCGGTACTGCTACAAAACAAAGTTCGTTTCTCTTTCTCATAACAACCTCGCCGGTTCAATTCCTGCCTCCTTGGTGAACTGCTTTAACCTTGAAGGGTTTGATTTCTCCTTCAACAACCTTAGTGGGGTTGTCCCTTCTGGGCTTTGTGGCATTCCAAGGTTGTCTTATGTGTCGCTGAGAAACAATGCCTTGTCAGGGAGCGTGCAGGAGCTCGTTTCCTCATGCCAGAGTCTGGAACATTTGGATTTTGGAAGTAATAGGTTCACTGATTTGGCACCGTTCAGTGTCCTTGGAATGCAAAATCTTACCTATCTCAATTTATCGTATAATGGGTTTGGAGGACATATTCCTGAGATCAGTGCCTGTAGTGGTAGATTGCAAATCTTGGATGCTTCAGGGAATTTTTTGGATGGCGAGATTCCCTCCGGCATAACAAAATGCAAGAGCCTAAAGCTCTTGGCGTTGGAATTGAATAGGCTGGAGGGGAATATCCCAGTGGATATTCAGGAACTGCGGGGACTAATTGTTATCAAATTGGGTAATAATTCCATTGGTGGAATGATCCCCAAGGGCTTTGGTAGCGTCGAGCTTCTTGAATTGCTGGATTTGCACAATCTGAACCTTGCTGGCCAAATTCCTGAGGATATAAGCAATTGCAAGTTTCTTCTTGGGCTGGACCTTTCTGGTAATAAATTACAAGGTGAGATTCCTCAGACTCTTTACAACTTGACAAACCTGGAATCCCTTAATCTACATCATAACCAGCTTGATGGAAGCATCCCCCCAAGCCTAGGAAACCTATTAAGGATTCAATACCTAGATCTGTCACATAATTCACTTTCTGGTCCAATCCCCACTTCCCTTGGGAACTTAAATAACTTGACACATTTTGATCTCTCATTCAATAATCTGTCTGGTTTCATTCCTGAGATTGCAAACATACAGCGTTTTGGTGCATCTGCATTTTCCAATAATCCTTTTCTCTGTGGTCGTCCTTTGGACACCCCTTGCTTGGTAAACGGAGCTACATCGCCTTCATCTCCCGGGAAGGCTAAAGTTCTGAGCACCTCAGCAATCGTTGCAATTGTTGCTGCAGCTGTAATTCTCACTGGGGTTTGTTTGGTGACCATCATGAATATGGCGGCGCGTGGAAGAAAAAAAGAGGATGATCAGATTATGATTGTTGAGAGCACCCCTCTTGGGTCAACAGAATCAAATCTTATAATTGGAAAGCTGGTCCTCTTCAGCAAGAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGTACCAAAGCATTGCTTGATAAAGAGTCTTTGATAGGTGGTGGATCAATTGGTACAGTCTACCGAACTGATTTTGAAGGCGGGATCTCAATTGCAGTGAAGAAGCTGGAGACTATGGGAAGGATTAGAAACCAGGAGGAATTTGAGCATGAAATTGGGCGACTAGGCAATCTTCAACACCCTAATTTAGTTTCTTTTCAAGGTTATTATTGGTCCTCTTCAATGCATTTGATTCTATCAGAGTTTGTCCCAAATGGGAATCTCTATGATAATCTACATGGGTTGGGCTATGCTGGAACCAGCACTAGTAGAGGAAATAGGGAATTATATTGGTCTAGAAGGTTTCAAATTGCAGTGGGAACTGCCAGAGCCCTTGCTTATCTCCACCATGACTGTAGACCTCCAATTCTTCATCTCAACATTAAATCCTCTAACATACTCCTAGATGACAAGTATGAAGCTAAGTTGTCTGATTATGGATTAGGAAAGTTGCTTCCCATTTTGGATAATTATGGTCTGACCAAATTCCACAATGCTGTGGGATATGTTGCACCAGAGTTGGCTCAAGGGCTGAGGCAGAGTGAGAAATGCGATGTTTACAGTTTTGGAGTTATTCTTTTGGAGCTGGTTACAGGGAGGAAGCCTGTGGAAAGTCCAACCACAAATGAGGTGGTGGTCTTGTGTGAATATGTAAGAGGTTCGTTAGAGACTAGCTCAGCTTCAGATTGCTTTGACAGAAATTTACTGGGCTTTACTGAGAACGAATTGATTCAGGTTATGAGATTGGGACTAATTTGTACTTCGGAGGATCCTTTAAGGAGACCAAGCATGGCTGAGGTTGTCCAGGTCCTTGAATCCATTAGAAATGGATTAGATTCCCATTAA 2658 0.4349 MRRHRAIHLSHALLCTVFCCLVTASAVTEKEILLEFKGNITDDPRASLSSWVSSGNPCNDYKGVSCNSEGFVERIVLWNTSLGGVLSSSLSGLKRLRILTLFGNRLSGGIPEGYGDLHSLWKINLSSNALSGSIPEFIGDLPSIRFLDLSKNGFTGEIPSALFRYCYKTKFVSLSHNNLAGSIPASLVNCFNLEGFDFSFNNLSGVVPSGLCGIPRLSYVSLRNNALSGSVQELVSSCQSLEHLDFGSNRFTDLAPFSVLGMQNLTYLNLSYNGFGGHIPEISACSGRLQILDASGNFLDGEIPSGITKCKSLKLLALELNRLEGNIPVDIQELRGLIVIKLGNNSIGGMIPKGFGSVELLELLDLHNLNLAGQIPEDISNCKFLLGLDLSGNKLQGEIPQTLYNLTNLESLNLHHNQLDGSIPPSLGNLLRIQYLDLSHNSLSGPIPTSLGNLNNLTHFDLSFNNLSGFIPEIANIQRFGASAFSNNPFLCGRPLDTPCLVNGATSPSSPGKAKVLSTSAIVAIVAAAVILTGVCLVTIMNMAARGRKKEDDQIMIVESTPLGSTESNLIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYRTDFEGGISIAVKKLETMGRIRNQEEFEHEIGRLGNLQHPNLVSFQGYYWSSSMHLILSEFVPNGNLYDNLHGLGYAGTSTSRGNRELYWSRRFQIAVGTARALAYLHHDCRPPILHLNIKSSNILLDDKYEAKLSDYGLGKLLPILDNYGLTKFHNAVGYVAPELAQGLRQSEKCDVYSFGVILLELVTGRKPVESPTTNEVVVLCEYVRGSLETSSASDCFDRNLLGFTENELIQVMRLGLICTSEDPLRRPSMAEVVQVLESIRNGLDSH 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02499 885 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g12460 26 164 - -
Viun2g02499 885 Gene3D Ribonuclease Inhibitor 22 89 IPR032675 -
Viun2g02499 885 Gene3D Phosphorylase Kinase; domain 1 569 673 - -
Viun2g02499 885 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 674 884 - -
Viun2g02499 885 Gene3D Ribonuclease Inhibitor 103 166 IPR032675 -
Viun2g02499 885 SUPERFAMILY L domain-like 164 492 - -
Viun2g02499 885 SUPERFAMILY L domain-like 72 161 - -
Viun2g02499 885 SUPERFAMILY Protein kinase-like (PK-like) 598 876 IPR011009 -
Viun2g02499 885 SMART LRR_typ_2 262 285 IPR003591 -
Viun2g02499 885 SMART LRR_typ_2 141 165 IPR003591 -
Viun2g02499 885 SMART LRR_typ_2 238 261 IPR003591 -
Viun2g02499 885 SMART LRR_typ_2 93 117 IPR003591 -
Viun2g02499 885 SMART LRR_typ_2 406 430 IPR003591 -
Viun2g02499 885 SMART LRR_typ_2 454 476 IPR003591 -
Viun2g02499 885 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Viun2g02499 885 Pfam Leucine rich repeat 240 297 IPR001611 GO:0005515
Viun2g02499 885 Pfam Leucine rich repeat 95 153 IPR001611 GO:0005515
Viun2g02499 885 Gene3D Ribonuclease Inhibitor 167 503 IPR032675 -
Viun2g02499 885 CDD STKc_IRAK 603 878 - -
Viun2g02499 885 Gene3D Transferase(Phosphotransferase) domain 1 674 884 - -
Viun2g02499 885 ProSiteProfiles Leucine-rich repeat profile. 408 431 IPR001611 GO:0005515
Viun2g02499 885 ProSiteProfiles Leucine-rich repeat profile. 240 261 IPR001611 GO:0005515
Viun2g02499 885 ProSiteProfiles Protein kinase domain profile. 597 885 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02499 885 FunFam Putative LRR receptor-like serine/threonine-protein kinase 574 673 - -
Viun2g02499 885 PANTHER OS05G0588300 PROTEIN 204 304 - -
Viun2g02499 885 Pfam Protein kinase domain 599 873 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02499 885 Pfam Leucine Rich Repeat 408 430 IPR001611 GO:0005515
Viun2g02499 885 Pfam Leucine Rich Repeat 433 454 IPR001611 GO:0005515
Viun2g02499 885 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g12460 165 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02499 Viun-Chr2 31389985 31393993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02499 25 884 Receptor kinase-like Gene Family AT1G62950 65.708 0.0 1108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Viun2g02499 Pkinase 9e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02499 - - gmx:100805681 1570.44