Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02478 ATGGAAGTTCCTCGCTTTCTTTCTCTGTTTCTTTTGATTTCATTTGTAATTCTTCGTGTGGTTGCCGGAACTGCGGAGCTTAGAGCTCTGATGGAGTTGAAGTCCTCTCTGGACCCAGATGGCAAGATCCTAGCCTCGTGGATCAGTGACGGTAACCCATGCAGTGGCTTGTTCGAAGGGGTTGCGTGCAACCAGAACCAGAAAGTGGCCAACATCTCCTTGCAGGGAAAGGGTCTTTCGGGTTGGCTATCTCCAGCACTGGCTGAACTCAAATGCTTGTCAGGTTTATACTTGCATTATAACAACCTTTCCGGTGAGATACCCCCACACATTTCAAATCTCACTGATCTGGTTGATCTCTATCTCGACGTCAATAGTTTATCTGGAACTATTCCTCCTGAGCTCGGCAACATGGCTAGTCTCCAGGTGCTGCAGTTGGGTGATAACCAGTTGGTGGGGAATATACCGACACAGATGGGTTCCTTAAAGCAGCTTAGTACTCTTGCTTTGCAATATAACAAGTTAACTGGTCAGATTCCTCTTAGCTTGGGGACGTTAGAGAAGTTAAGAAGGCTAAATTTGAGCTTCAACAACTTTAATGGTACTGTTCCGGCAACACTAGCACATCTTGAACATTTGGAAGTTCTAGACGTTCAGAACAATTCTTTATCAGGAATTGTTCCTTCGGCATTGAAGAGACTTGGGGAAGGATTCCAAGGTGCAAACAACCCGGGTTTATGTGGAGTTGAGTTTTCTACTTTGAGAGCATGCAACAAAGATCAGGATTTAAACGTTAACCATATTGATACCTTGGATCGAGATCAACACAAAAGTCGTAATTCTTCGAAGGCTCTCCCAGAGCCTGCAAATGTTCAGTTGCATTGTGACCACACCCATTGTTCAAAATCAAGGTTTCCCCAAATTGTCATCACAGGAGGTGTTATAGCTGTTAGTCTTACATTCATATGTGCTGGATTTTTGACATTCTTCAGATACCGCCGTCAAAAGCAACGGATCAGCAATACATCAAGTTCTTCTTCTCAAGGGAAACTTAGTCCTTACCAGCCTAAAGAATTGTACACAAAAAGTCCTTCTGCACTTGTTAATATTGAGTACTATAGTGGGTGGGATCATTTGTCTAACGGTCAAAACGCCGATGCCGGTGGGTTATTGAATGATTATCTAAGTCAATTCAGGTTTAATGTGGATGAGGTTGAATCTGCAACACAGTATTTCTCGGAAGCCAGTTTACTTGGTAAGAGCAAATTCTCAGCAGTTTATAAAGGAGTTATTAGAGATGGTTCTCTTGTGGCTATTAGAAGCATCAGCGTGACATGCTGTAAAACCGAGGAAGCCGAATTTGTAAAGGGGTTGAACTTACTAACCTCTCTCAGACATGAAAACCTTGTTAGGCTGAGAGGTTTTTGTTGCTCAAGGAGTAGAGGTGAATGTTTCCTTATCTATGACTTCGCCACCATGGGTAACCTTTCCCAATATCTTGACTTGGAGGATGGAAGTGACCATGTGCTTGAGTGGTCCAAAAGAGTTTCTATCATCAACGGCATTGCAAAGGGAATTGGATATCTTCACAGCAATGATGCAAGCAAGCCTACAATAGTTCACCAGAATATTTCAGTGGAAAATATTCTCCTAGACCATCAGTTTAATCCATTGATCATGGATGCTGGACTACCTAAGCTTCTTGCAGATGATGTTGTTTTCTCAGCTCTTAAAGTAAGTGCTGCAATGGGATACTTGGCTCCCGAATACATTACCACCGGACGATTTACTGAGAAGAGTGACATATACGCATTTGGAGTTATTATTCTTCAAGTTTTATCTGGCAAGACGACAATAGGTAGTTCAATACGGACAGCAGTTGAGTCTTTCAGATTTGATGATTCTGTGGACGCAAATCTTAGGGGAAGGTATTCTAAATCTGAAGCAGCCACACTTTCGAAGCTTGCAATACAGTGTACTCATGAGTCTCCTGACCAAAGACCAACCGTGGTGGATGTGATTCAGGAGTTGAGTGTGTCTTCTGCTCATTTGTAA 2055 0.4273 MEVPRFLSLFLLISFVILRVVAGTAELRALMELKSSLDPDGKILASWISDGNPCSGLFEGVACNQNQKVANISLQGKGLSGWLSPALAELKCLSGLYLHYNNLSGEIPPHISNLTDLVDLYLDVNSLSGTIPPELGNMASLQVLQLGDNQLVGNIPTQMGSLKQLSTLALQYNKLTGQIPLSLGTLEKLRRLNLSFNNFNGTVPATLAHLEHLEVLDVQNNSLSGIVPSALKRLGEGFQGANNPGLCGVEFSTLRACNKDQDLNVNHIDTLDRDQHKSRNSSKALPEPANVQLHCDHTHCSKSRFPQIVITGGVIAVSLTFICAGFLTFFRYRRQKQRISNTSSSSSQGKLSPYQPKELYTKSPSALVNIEYYSGWDHLSNGQNADAGGLLNDYLSQFRFNVDEVESATQYFSEASLLGKSKFSAVYKGVIRDGSLVAIRSISVTCCKTEEAEFVKGLNLLTSLRHENLVRLRGFCCSRSRGECFLIYDFATMGNLSQYLDLEDGSDHVLEWSKRVSIINGIAKGIGYLHSNDASKPTIVHQNISVENILLDHQFNPLIMDAGLPKLLADDVVFSALKVSAAMGYLAPEYITTGRFTEKSDIYAFGVIILQVLSGKTTIGSSIRTAVESFRFDDSVDANLRGRYSKSEAATLSKLAIQCTHESPDQRPTVVDVIQELSVSSAHL 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02478 684 Gene3D Ribonuclease Inhibitor 177 243 IPR032675 -
Viun2g02478 684 SMART LRR_typ_2 138 162 IPR003591 -
Viun2g02478 684 SMART LRR_typ_2 210 233 IPR003591 -
Viun2g02478 684 SMART LRR_typ_2 186 209 IPR003591 -
Viun2g02478 684 SMART LRR_typ_2 90 114 IPR003591 -
Viun2g02478 684 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
Viun2g02478 684 SUPERFAMILY Protein kinase-like (PK-like) 394 678 IPR011009 -
Viun2g02478 684 ProSiteProfiles Protein kinase domain profile. 412 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02478 684 SUPERFAMILY L domain-like 26 233 - -
Viun2g02478 684 Gene3D Transferase(Phosphotransferase) domain 1 493 683 - -
Viun2g02478 684 FunFam Protein NSP-INTERACTING KINASE 2 383 490 - -
Viun2g02478 684 Gene3D Phosphorylase Kinase; domain 1 383 490 - -
Viun2g02478 684 MobiDBLite consensus disorder prediction 269 288 - -
Viun2g02478 684 Pfam Protein tyrosine and serine/threonine kinase 416 677 IPR001245 GO:0004672|GO:0006468
Viun2g02478 684 Gene3D Ribonuclease Inhibitor 23 176 IPR032675 -
Viun2g02478 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 140 679 IPR046959 -
Viun2g02478 684 FunFam Protein NSP-INTERACTING KINASE 2 491 681 - -
Viun2g02478 684 Pfam Leucine rich repeat 188 234 IPR001611 GO:0005515
Viun2g02478 684 FunFam Protein NSP-INTERACTING KINASE 2 23 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02478 Viun-Chr2 31252596 31256128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02478 21 525 Miscellaneous Gene Families AT4G22730 56.809 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Viun2g02478 PK_Tyr_Ser-Thr 1.3e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02478 - - gmx:100777169 1173.69