Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02474 ATGGGGAGACAACCTTGCTGTGACAAACTTGGAGTGAAGAAAGGTCCATGGACTGCTGAGGAAGACAAAAAACTGATAAACTTCATTCTCACCAATGGCCAGTGCTGTTGGCGTGCTGTTCCCAAGCTTGCTGGTCTTCGCCGTTGTGGTAAGAGTTGTCGTCTTCGCTGGACTAATTATCTCAGACCTGACTTGAAGAGAGGCCTCCTCACACAGGCAGAAGAACAACTTGTTATTGATCTCCATGCCCGTCTTGGAAACAGGTGGTCCAAGATTGCTGCCAGGTTACCAGGAAGAACAGACAACGAGATTAAGAATCACTGGAACACACACATCAAGAAAAAGCTCCTTAAGATGGGTATTGATCCTGTTACTCATGAGCCTCTCAACAAAGAAGTCACATCACAGGATAGTTCTTCCCCTGCAGAGCATTTTTCACAAGTTGATAATACTAATATCCATCAGGTTAAGGAAAACAGTGTGGCTCTCAACTTGGAAGAGAATTCCACCTCATCACCAGCAGAAAATTCTTCTGGGGAAGAATCCCTTTTGATGGATAGCATTTGCAGTGATGTGTCTTTGATGAACAGTATGTGGCTGGATGAAACTCCTCTTATGGACATGTTATGGGACAGTACACCTAAATTGGAGAATGAAAAGTTGCCAATGTGGGAGGATAATTGTCCTTGGTTGTTGGACTGCCAGGACTTTGGTATTCATGATTTTGGTTTTAATTGTTCCAGCGAGATTGAATCAAATGCACTGCAAACTCTAGACATGGACAGAAAAGGGCTTTAG 798 0.4373 MGRQPCCDKLGVKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTQAEEQLVIDLHARLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLNKEVTSQDSSSPAEHFSQVDNTNIHQVKENSVALNLEENSTSSPAENSSGEESLLMDSICSDVSLMNSMWLDETPLMDMLWDSTPKLENEKLPMWEDNCPWLLDCQDFGIHDFGFNCSSEIESNALQTLDMDRKGL 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02474 265 PANTHER F14D16.11-RELATED 1 177 - -
Viun2g02474 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Viun2g02474 265 CDD SANT 16 61 IPR001005 -
Viun2g02474 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Viun2g02474 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Viun2g02474 265 MobiDBLite consensus disorder prediction 131 151 - -
Viun2g02474 265 FunFam MYB transcription factor 70 147 - -
Viun2g02474 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Viun2g02474 265 Gene3D - 70 147 - -
Viun2g02474 265 SMART sant 13 63 IPR001005 -
Viun2g02474 265 SMART sant 66 114 IPR001005 -
Viun2g02474 265 FunFam MYB transcription factor 11 67 - -
Viun2g02474 265 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Viun2g02474 265 CDD SANT 71 112 IPR001005 -
Viun2g02474 265 Gene3D - 12 67 - -
Viun2g02474 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Viun2g02474 265 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02474 Viun-Chr2 31232444 31234323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02474 1 244 MYB Transcription Factor Family AT4G22680 58.647 6.96e-101 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g02474 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02474 K09422 - gmx:100800360 500.36