Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02469 ATGAACACTTTTTCTCATGTCCCTCCTGGATTTCGTTTCCATCCCACTGATGAAGAACTTGTTCATCACTACCTTAAGAAAAAAGTAGCTTCTAAAAGGATTGACCCAGATGTGATAAAAGACATCGATCTCTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAAATTGGAAACGATGAAGAAGATGAATGGTACTTCTTTAGCCACAAGGACAAGAAGTACCCAACAGGCACTCGTACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGGAGAGACAAAGCAATTTACTGTAAACATTTTCTTACTGGAATGAGAAAGACTCTTGTGTTTTACAGAGGAAGAGCACCCAATGGACAAAAATCTGACTGGATCATGCATGAGTATCGGCTACAAACCAATGAAAATGGAACTCCTCAGGAAGAAGGGTGGGTTGTGTGTAGAGTGTTCAAAAAGCGGACGACAACTGCGAGGAAAATGGGGGATTACGTGTCGCCATGTTGGTATGATGACCAAGTCTCGTTCATGCAAGAACTGGAATCTCCAATGCCAATGTCTAACCCTAATGCACCAAATCGTCACCCTTACCCATGCAAGAAGGAGTTGGAATTGCAATTCAATATTCCTCACGACGCTTTCCTCCAACTTCCACAACTTCACAGTCCCGTGGTTCCTCAATCTGTGACTGGTTTGAGTTTTATCCCAGTTGTCTCTTATGGTGGCAAGAACAATGGAAATGCATTGCAGTGTTCGTCACTCACCCAAGAACATCGACAGTTTCATTATGCTAGTAATGATCAATCTATGGACCATGTTATGGATTGGCGAGTTCTTGACCAGTTTGTGGATAATCAGCTGAGTCACCATGAACACTTTTCCAGTGTGGCTCAACAGATGAAGGTGATAGCAAACGGATCAACAAAACCAGAAACTGGTCAGGAAAGTGCTTCAACTTCCATCTCCGGTTGCCAGATTGACCTGTGGAAATGA 1002 0.4271 MNTFSHVPPGFRFHPTDEELVHHYLKKKVASKRIDPDVIKDIDLYKIEPWDLQELCKIGNDEEDEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYCKHFLTGMRKTLVFYRGRAPNGQKSDWIMHEYRLQTNENGTPQEEGWVVCRVFKKRTTTARKMGDYVSPCWYDDQVSFMQELESPMPMSNPNAPNRHPYPCKKELELQFNIPHDAFLQLPQLHSPVVPQSVTGLSFIPVVSYGGKNNGNALQCSSLTQEHRQFHYASNDQSMDHVMDWRVLDQFVDNQLSHHEHFSSVAQQMKVIANGSTKPETGQESASTSISGCQIDLWK 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02469 333 SUPERFAMILY NAC domain 5 156 IPR036093 GO:0003677|GO:0006355
Viun2g02469 333 Gene3D NAC domain 16 160 IPR036093 GO:0003677|GO:0006355
Viun2g02469 333 FunFam NAC domain-containing protein 16 160 - -
Viun2g02469 333 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Viun2g02469 333 MobiDBLite consensus disorder prediction 310 333 - -
Viun2g02469 333 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Viun2g02469 333 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02469 Viun-Chr2 31205862 31208915 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02469 1 333 NAC Transcription Factor Family AT1G12260 55.108 4.97e-130 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun2g02469 NAM 3.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02469 - - gmx:100779370 503.056