Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02468 ATGGTGATCCTTTTAATTTTTGAGTTTTCCTCCCTCAAATGCAGGTTAATTAAATCAAGAGCTGATATGAACACTTTTTCTCATGTCCCTCCTGGATTTCGTTTCCATCCCACTGATGAAGAACTTGTTCATCACTACCTTAAGAAAAAAGTAGCTTCTAAAAGGATTGACCCAGATGTGATAAAAGACATCGATCTCTATAAAATCGAGCCATGGGATCTTCAAGAATTATGCAAAATTGGAAACGATGAAGAAGATGAATGGTACTTCTTTAGCCACAAGGACAAGAAGTACCCAACAGGCACTCGTACCAATAGAGCTACAAAAGCAGGATTCTGGAAAGCTACAGGGAGAGACAAAGCAATTTACTGTAAACATTTTCTTACTGGAATGAGAAAGACTCTTGTGTTTTACAGAGGAAGAGCACCCAATGGACAAAAATCTGACTGGATCATGCATGAGTATCGGCTACAAACCAATGAAAATGGAACTCCTCAGGAAGAAGGGTGGGTTGTGTGTAGAGTGTTCAAAAAGCGGACGACAACTGCGAGGAAAATGGGGGATTACGTGTCGCCATGTTGGTATGATGACCAAGTCTCGTTCATGCAAGAACTGGAATCTCCAATGCCAATGTCTAACCCTAATGCACCAAATCGTCACCCTTACCCATGCAAGAAGGAGTTGGAATTGCAATTCAATATTCCTCACGACGCTTTCCTCCAACTTCCACAACTTCACAGTCCCGTGGTTCCTCAATCTGTGACTGGTTTGAGTTTTATCCCAGTTGTCTCTTATGGTGGCAAGAACAATGGAAATGCATTGCAGTGTTCGTCACTCACCCAAGAACATCGACAGTTTCATTATGCTAGTAATGATCAATCTATGGACCATGTTATGGATTGGCGAGTTCTTGACCAGTTTGTGGATAATCAGCTGAGTCACCATGAACACTTTTCCAGTGTGGCTCAACAGATGAAGGTGATAGCAAACGGATCAACAAAACCAGAAACTGGTCAGGAAAGTGCTTCAACTTCCATCTCCGGTTGCCAGATTGACCTGTGGAAATGA 1068 0.4213 MVILLIFEFSSLKCRLIKSRADMNTFSHVPPGFRFHPTDEELVHHYLKKKVASKRIDPDVIKDIDLYKIEPWDLQELCKIGNDEEDEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYCKHFLTGMRKTLVFYRGRAPNGQKSDWIMHEYRLQTNENGTPQEEGWVVCRVFKKRTTTARKMGDYVSPCWYDDQVSFMQELESPMPMSNPNAPNRHPYPCKKELELQFNIPHDAFLQLPQLHSPVVPQSVTGLSFIPVVSYGGKNNGNALQCSSLTQEHRQFHYASNDQSMDHVMDWRVLDQFVDNQLSHHEHFSSVAQQMKVIANGSTKPETGQESASTSISGCQIDLWK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02468 355 Pfam No apical meristem (NAM) protein 30 157 IPR003441 GO:0003677|GO:0006355
Viun2g02468 355 MobiDBLite consensus disorder prediction 332 355 - -
Viun2g02468 355 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 28 290 - -
Viun2g02468 355 FunFam NAC domain-containing protein 38 182 - -
Viun2g02468 355 SUPERFAMILY NAC domain 24 178 IPR036093 GO:0003677|GO:0006355
Viun2g02468 355 Gene3D NAC domain 38 182 IPR036093 GO:0003677|GO:0006355
Viun2g02468 355 ProSiteProfiles NAC domain profile. 29 178 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02468 Viun-Chr2 31205839 31207391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02468 23 355 NAC Transcription Factor Family AT1G12260 55.108 1.03e-129 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Viun2g02468 NAM 4.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02468 - - gmx:100779370 503.056