Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02430 ATGCCTCCTCCTCTGTTCCTCCTCTGTTTCATGCTCTGCATTTCCCACACACACCAAATCATTCTGTTACCCTTAACAAACTCAATTTCGAAAACCCAATTCAACAGTACCCATCACCTCCTCAAAGCCACCTCCACTCGCTCAGCCTCGCGCTTCCACCGGCAGCGGCACAACCAGAACTCAATCTCTCTGCCACTGTCATCAGGAAGCGACTACACCCTTTCCTTCAGCTTAGCTTCAAACCCTTCTCAATCCATAACCCTTTACATGGACACAGGCAGCGACCTCGTCTGGTTCCCATGCGCTCCCTTCGAGTGCATTCTCTGTGAAGGCAAATTCAACGCTACGACACCCCTCAACGTCACGCGCTCCCACCGCGTCTCTTGCCAATCCCCTGCATGCTCCGCAGCACACTCCTCCATGTCCTCCCCTGACCTCTGCGCAATCGCACGTTGTCCTCTCGACAATATCGAAACCTCTGATTGCTCTTCTGCCACCTGTCCACCTTTCTACTACGCTTACGGCGACGGAAGCTTCATCGCGCGCCTTTACCGCGATTCTCTATCCATGTCCTCTCTTTTTCTTAAAAACTTCACCTTCGGTTGCGCCCACACCGCACTCGCCGAACCCACCGGCGTCGCAGGTTTCGGTCGGGGCTTGTTGTCCCTCCCTGCGCAACTTGCTACCCTCTCCCCAAACCTCGGTAACCGTTTTTCTTACTGTCTGGTTTCTCACTCTTTCGATCAACAACGAGTTCGCAAACCGAGTCCACTCATTCTCGGCCGCTACGACGATTCTGGCGAGGGTAGTGAGTTTGTTTACACGTCCATGCTTCGGAACCCGAAGCATCCTTATTTCTACTGCGTCGGACTCGCCGGAATCTCCGTCGGGAAGAGGACTATTCCGGCTCCGGAGATGCTGCGGAGGGTGAACCGCAGAGGGGACGGCGGCGTGGTTGTTGACAGCGGAACCACGTTCACGATGTTGCCGGCGAGTTTGTATAACTCGGTGGTGAGTGAGTTTGACCGGCGAGTGGGGCGAGTTCAGAAACGCGCGAGTATGGTGGAGGAGAAAACGGGCCTTGGGCCGTGTTATTTTTTGGAAGGGTTGGTGGAGGTGCCTACGGTGACGTGGCACTTTGTGGGGAATGATTCAAATGTGGTGCTGCCTAGGGAGAACTATTTTTATGAGTTTTTGGACGGTAGTTATGGGATTAGGAGGAAGGTGGGGTGCTTGATGTTGATGAACGGTGGTGATGAGAGTGAGTTGAGCGGTGGACCTGGGGCCACACTTGGGAACTATCAGCAGCAAGGGTTTGAGGTGGTGTATGACTTGGAAAACCAGCGCGTGGGTTTCGCTAAGAGGCAATGCGCTTCGCTTTGGGATAGCCTCAACCGTCACAAAAGCTAG 1410 0.5404 MPPPLFLLCFMLCISHTHQIILLPLTNSISKTQFNSTHHLLKATSTRSASRFHRQRHNQNSISLPLSSGSDYTLSFSLASNPSQSITLYMDTGSDLVWFPCAPFECILCEGKFNATTPLNVTRSHRVSCQSPACSAAHSSMSSPDLCAIARCPLDNIETSDCSSATCPPFYYAYGDGSFIARLYRDSLSMSSLFLKNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPNLGNRFSYCLVSHSFDQQRVRKPSPLILGRYDDSGEGSEFVYTSMLRNPKHPYFYCVGLAGISVGKRTIPAPEMLRRVNRRGDGGVVVDSGTTFTMLPASLYNSVVSEFDRRVGRVQKRASMVEEKTGLGPCYFLEGLVEVPTVTWHFVGNDSNVVLPRENYFYEFLDGSYGIRRKVGCLMLMNGGDESELSGGPGATLGNYQQQGFEVVYDLENQRVGFAKRQCASLWDSLNRHKS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02430 469 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 318 329 IPR001969 GO:0004190|GO:0006508
Viun2g02430 469 Gene3D Acid Proteases 56 261 IPR021109 -
Viun2g02430 469 SUPERFAMILY Acid proteases 81 462 IPR021109 -
Viun2g02430 469 ProSiteProfiles Peptidase family A1 domain profile. 72 453 IPR033121 -
Viun2g02430 469 PANTHER OS07G0603500 PROTEIN-RELATED 30 457 - -
Viun2g02430 469 Pfam Xylanase inhibitor N-terminal 81 261 IPR032861 -
Viun2g02430 469 FunFam Probable aspartyl protease At4g16563 62 260 - -
Viun2g02430 469 FunFam aspartic proteinase nepenthesin-1 262 462 - -
Viun2g02430 469 Pfam Xylanase inhibitor C-terminal 287 453 IPR032799 -
Viun2g02430 469 CDD pepsin_A_like_plant 72 457 IPR034161 -
Viun2g02430 469 Gene3D Acid Proteases 263 463 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02430 Viun-Chr2 31077518 31079564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02430 42 460 Miscellaneous Gene Families AT1G77480 26.009 4.53e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02430 - - gmx:100807884 832.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02430 2 31077518 31079564 Viun2g02430 2 31077518 31079564 ECH
Viun2g02430 2 31077518 31079564 Viun3g04168 3 49345017 49347226 PCT