Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02404 ATGGAGCGCCACAAATGCAAGCTCTGTTCCAGAACATTCGCCAATGGCAGAGCCCTCGGTGGCCACATGAAGGCTCACTTAGCCACCCTACCTCTTCCCCCCAAACCAGAACCTCTTCCTCACTCTCTCAACACTTTATCTTCCAATTCATCTTCACAACATGATAATGAAGAACAAGAACAAGACAAGGCTCTCGTCAACTACGCCTTGCGAGAGAATCCCAAGAAATGTTTCAGGCTCGCAGATCCCGAGTTCGACTCCGGCGCCGTCGTGCAAGACAGGGAGAGCGAGACCGAGTCAAAGAACCCAACCCGCCGACGATCCAAGCGCCCACGCAGGCCCGCCAATTCCCAGCCCAAGGCCCGGCCCAAACTCAGTTTCATGGAGTCACCTGAGCCCGTCAGCTCCGTCTCCGACACTTCCCCCGAGGAGGACGTCGCCATGTGCCTCATGATGCTGTCCAGAGACCGTTGGAGCAAGAACACCAACGGCGCTGTCGAAGAAGAGAGATCAGTGGAAGAGATCAAGTTCAGAAGAGTCCGCCAGAAGCACCAGTGCCAGAGTTGCGAGAAGACGTTTCGATCTTCACGCGCATTGGGCAGTCACCGAAGCATTTGCGAAGGGTCGGGTAACGATAGTAAAATCTTCGAATGCCCCTTTTGTTCTAAGGTTTTTGGGTCTGGTCAAGCACTGGGTGGCCACAAGAGATCTCACATGGTACCTTCTTCCTCCTCCACCGCCAACGATTCCACCACCCGCTTCAAAGACAGCTTCATAGATCTCAACTTCCCCGCTCCACCCGAAGAAGACGAACTCAGCGTTGTTTCTGATGCCCAATTCGATGACTAA 849 0.5395 MERHKCKLCSRTFANGRALGGHMKAHLATLPLPPKPEPLPHSLNTLSSNSSSQHDNEEQEQDKALVNYALRENPKKCFRLADPEFDSGAVVQDRESETESKNPTRRRSKRPRRPANSQPKARPKLSFMESPEPVSSVSDTSPEEDVAMCLMMLSRDRWSKNTNGAVEEERSVEEIKFRRVRQKHQCQSCEKTFRSSRALGSHRSICEGSGNDSKIFECPFCSKVFGSGQALGGHKRSHMVPSSSSTANDSTTRFKDSFIDLNFPAPPEEDELSVVSDAQFDD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02404 282 ProSitePatterns Zinc finger C2H2 type domain signature. 218 238 IPR013087 -
Viun2g02404 282 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Viun2g02404 282 SUPERFAMILY beta-beta-alpha zinc fingers 183 238 IPR036236 -
Viun2g02404 282 MobiDBLite consensus disorder prediction 258 282 - -
Viun2g02404 282 Pfam C2H2-type zinc finger 3 28 - -
Viun2g02404 282 Pfam C2H2-type zinc finger 184 203 - -
Viun2g02404 282 Pfam C2H2-type zinc finger 216 239 - -
Viun2g02404 282 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Viun2g02404 282 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 280 IPR044303 GO:0006355
Viun2g02404 282 MobiDBLite consensus disorder prediction 232 251 - -
Viun2g02404 282 MobiDBLite consensus disorder prediction 88 142 - -
Viun2g02404 282 SMART c2h2final6 216 238 IPR013087 -
Viun2g02404 282 SMART c2h2final6 184 204 IPR013087 -
Viun2g02404 282 SMART c2h2final6 4 26 IPR013087 -
Viun2g02404 282 MobiDBLite consensus disorder prediction 88 104 - -
Viun2g02404 282 Gene3D Classic Zinc Finger 157 240 - -
Viun2g02404 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 216 238 IPR013087 -
Viun2g02404 282 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Viun2g02404 282 MobiDBLite consensus disorder prediction 28 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02404 Viun-Chr2 30996928 30998043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02404 2 273 C2H2 Transcription Factor Family AT1G02030 40.764 3.70e-47 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun2g02404 zf-C2H2_6 1.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02404 - - vun:114173003 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02404 2 30996928 30998043 Viun3g04156 3 49230124 49231632 PCT