Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02382 ATGGGTGCCTACAAGTATGTTTCAGAGCTATGGCGCAAGAAGCAGTCTGATGTTATGCGGTTTTTGCAGCGGGTGAGGTGTTGGGAGTACAGGCAGCTGCCTTCCATTGTTCGTTTGACCAGGCCAACCCGTCCCGACAAGGCTCGTCGCTTGGGCTATAAGGCTAAGCAGGGTTACGTTGTGTACCGTGTTCGTGTGCGTAGGGGTGGCAGAAAGAGACCAGTGCCCAAGGGTATTGTTTATGGTAAGCCAACAAACCAGGGTGTTACTCAATTAAAATTCCAGCGTAGCAAGAGGTCTGTTGCTGAGGAGCGAGCTGGACGGAAGCTGGGTGGACTTAGGGTTCTCAACTCTTACTGGGTGAACGAGGACTCGACTTACAAGTACTTCGAGATAATTCTGGTAGATGTTGCTCATGCTGCTATTAGAAATGATCCCAGAATCAATTGGCTCTGCAATCCAGTGCATAAGCACAGGGAGCTGCGTGGTCTCACCTCTGCAGGGAAAAGCAACAGGGGTTTACGTGGCAGAGGACATCTGTACCACAAGGCTCGTCCATCCCGCAGGGCTACCTGGAAGAGAAACAACACCCTGTCACTTCGCCGCTACCGTTAA 615 0.5154 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDVAHAAIRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGRGHLYHKARPSRRATWKRNNTLSLRRYR 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02382 204 Pfam Ribosomal L15 2 190 IPR000439 GO:0003735|GO:0005840|GO:0006412
Viun2g02382 204 ProSitePatterns Ribosomal protein L15e signature. 46 69 IPR020925 GO:0003735|GO:0005840|GO:0006412
Viun2g02382 204 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 1 195 IPR012678 GO:0003735|GO:0005840|GO:0006412
Viun2g02382 204 SMART Ribosomal_L15e_2 2 193 IPR000439 GO:0003735|GO:0005840|GO:0006412
Viun2g02382 204 PANTHER RIBOSOMAL PROTEIN L15 1 204 IPR000439 GO:0003735|GO:0005840|GO:0006412
Viun2g02382 204 FunFam Ribosomal protein L15 1 204 - -
Viun2g02382 204 Gene3D Ribosomal protein l15e 1 204 IPR024794 GO:0003735|GO:0005840
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02382 Viun-Chr2 30887214 30889230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02382 1 204 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.176 4.40e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02382 K02877 - gmx:100305473 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02382 2 30887214 30889230 Viun3g04132 3 49114249 49116501 PCT