Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02381 ATGGCATCCCCCAAGAAAACTAACAACAGAGGAGCATGGACCGTGGAGGAAGATCAGAGACTAGCTCAATGCATTGAAATTCACGGTGCAAAGAGGTGGAAAACTGTTGCACTTAAATCAGGTCTAAACAGATGCGGAAAAAGTTGCAGGTTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGCAACATATCAGTTGAAGAAGAGGATTTGATTATCAGGCTTCACAAACTACTAGGAAACAGGTGGGCATTGATAGCTAGGAGACTTCCAGGGCGAACAGATAATGAAATCAAGAACTACTGGAATACTTGTTTGTGCAAAAAAGTTAATCATCAGAAAATGGTGAAACCAGAAACTTCAATGGCGCAACCAACACATTCGACTCAGAATACTGAGGAAAAAGTAGCAGTAGAGCATAAAGAAGCCACTTGTGATGGAAGTGGGGACTCAGAAGTTAACTTTGATGTCAACGAATTCTTCAACTTCTCCATTGAAGGACTCTATGGGTATTTATGTGGCCATAAGTGGAGTCAAAAATCCATGTGTTGTGGTGGTGGTGGTGGATGTGGTGCTGATGGTGGTGTTCGTGGTGTTGGTGATGTTGGTTATGGTCGTGGTCGTGGTGGTAGTAGATGTGATGGTGGTGATGTTGGTTATGGTAGTGGTGATAGAGATTATGGTGTTGGTGGTGATTGTGGTGGTGGAGACAGTGGAGGTGGGGAAAAAACTTATGTGTAG 747 0.4337 MASPKKTNNRGAWTVEEDQRLAQCIEIHGAKRWKTVALKSGLNRCGKSCRLRWLNYLRPNIKRGNISVEEEDLIIRLHKLLGNRWALIARRLPGRTDNEIKNYWNTCLCKKVNHQKMVKPETSMAQPTHSTQNTEEKVAVEHKEATCDGSGDSEVNFDVNEFFNFSIEGLYGYLCGHKWSQKSMCCGGGGGCGADGGVRGVGDVGYGRGRGGSRCDGGDVGYGSGDRDYGVGGDCGGGDSGGGEKTYV 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02381 248 FunFam Myb transcription factor 10 62 - -
Viun2g02381 248 Gene3D - 2 63 - -
Viun2g02381 248 CDD SANT 12 57 IPR001005 -
Viun2g02381 248 SMART sant 62 110 IPR001005 -
Viun2g02381 248 SMART sant 9 59 IPR001005 -
Viun2g02381 248 Gene3D - 65 143 - -
Viun2g02381 248 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Viun2g02381 248 FunFam Transcription factor TT2 66 138 - -
Viun2g02381 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 57 IPR017930 -
Viun2g02381 248 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 138 - -
Viun2g02381 248 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Viun2g02381 248 Pfam Myb-like DNA-binding domain 63 107 IPR001005 -
Viun2g02381 248 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Viun2g02381 248 SUPERFAMILY Homeodomain-like 9 104 IPR009057 -
Viun2g02381 248 CDD SANT 67 106 IPR001005 -
Viun2g02381 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02381 Viun-Chr2 30878613 30882038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02381 10 162 MYB Transcription Factor Family AT3G13540 49.390 6.16e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g02381 Myb_DNA-binding 5.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02381 K09422 - gmx:100816449 307.375