Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02380 ATGGAAGAGAAGAAGAAAAATGAAGCAGACGAAGCGAAAAAGAAGAACAAGAAAAGAGAGAGTGAGGAGAAACACCGAATGTACCGTGGGGTACGCATGCGTCAGTGGGGTAAATGGGTATCAGAAATAAGAGAGCCCAAGAAAAAGTCCAGAATCTGGCTCGGCACTTTCCCCACGCCAGAAATGGCGGCTCGAGCCCACGATGTGGCGGCGCTCACCATCAAAGGCACTTCCGCTTTCCTTAATTTCCCCGAACTAGCCTCACACCTTCCCCGCCCGCCCACCACTTCTCCTAAAGACATCCAAGCCGCCGCCGCCGAAGCTGCTGCACTCAATTGCGAGGCCCAGTCTCAGGCCCGGCCTCAAGCCCAAGCCCAGACCCAAGCCCAGATTATGCCCGATGGGGATGACGCGTTCTTCGACCTCCCTGATCTTTTAGCGGACTCAGGTCAGAGTGCAGGTGGCTTTGGTTATTCCGCGTCGTGGCTCGTAGCCGCACCTGAATATCTTGACTCTGCTTTTCGGCTCGATGACCCTCCATTCCCATGGGACTCTTCACTTTAA 564 0.5461 MEEKKKNEADEAKKKNKKRESEEKHRMYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAALTIKGTSAFLNFPELASHLPRPPTTSPKDIQAAAAEAAALNCEAQSQARPQAQAQTQAQIMPDGDDAFFDLPDLLADSGQSAGGFGYSASWLVAAPEYLDSAFRLDDPPFPWDSSL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02380 187 CDD AP2 28 86 IPR001471 GO:0003700|GO:0006355
Viun2g02380 187 MobiDBLite consensus disorder prediction 1 26 - -
Viun2g02380 187 PRINTS Ethylene responsive element binding protein signature 50 66 IPR001471 GO:0003700|GO:0006355
Viun2g02380 187 PRINTS Ethylene responsive element binding protein signature 28 39 IPR001471 GO:0003700|GO:0006355
Viun2g02380 187 ProSiteProfiles AP2/ERF domain profile. 27 84 IPR001471 GO:0003700|GO:0006355
Viun2g02380 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 147 - -
Viun2g02380 187 Pfam AP2 domain 28 76 IPR001471 GO:0003700|GO:0006355
Viun2g02380 187 Gene3D AP2/ERF domain 27 85 IPR036955 GO:0003700|GO:0006355
Viun2g02380 187 SUPERFAMILY DNA-binding domain 27 85 IPR016177 GO:0003677
Viun2g02380 187 SMART rav1_2 27 90 IPR001471 GO:0003700|GO:0006355
Viun2g02380 187 FunFam Ethylene-responsive transcription factor 2 26 85 - -
Viun2g02380 187 Coils Coil 2 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02380 Viun-Chr2 30866105 30866879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02380 6 111 AP2-EREBP Transcription Factor Family AT5G11590 69.811 1.48e-49 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Viun2g02380 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02380 - - gmx:100817503 234.572