Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02375 ATGACGGCTCAAAAGGAAGATTTGGGTTTGAGTCTAAGCTTGAGCTTCCCTCACAACGCTCCAACCCCTCTTCATCTCAATCTTCTCTCTACCCCCACTTATTCTTCTTCTCCTTCAAGCCACAACCCTCACAAACCCTCTTGGAACGACCCTTTCGCTTCTTCAGGTGAAGCTGGATCGTTCCTCCGCGGAATCGATGTGAACCGGTTACCTTCTGCGGTTGATTGCGAAGAGGAAGCGGGTGTCTCGTCTCCGAACAGCACGGTTTCTAGCGTCAGCGAAAAGCGTAGCGAGAGGGAAGCCAATGGGGAAGAAGAGCACGACACAGAAAGAGGTTGTTTCAGAGGCATCAGCGACGAAGAAGAAGGTGAAAATTGTAGAAAGAAACTCAGACTCTCCAAAGACCAATCCATTATTCTGGAAGAGAGTTTCAAAGAACACAGCACTCTTAACCCGAAACAAAAGTTGGCACTGGCGAAACAGTTGGGTCTTCGAGCAAGACAAGTGGAGGTGTGGTTCCAGAACAGAAGGGCAAGGACGAAGCTGAAACAAACGGAGGTGGACTGCGAGTTTTTGAAGAGGTGCTGTGAGAATCTGACGGAGGAAAACAGAAGGTTGCAGAAGGAAGTGCAAGAGCTGAGAGCACTGAAACTCTCCCCTCAGTTCTACATGCACATGACTCCACCAACCACTCTCACCATGTGTCCCTCTTGTGAGCGCGTCGCTGTTCCCTCTTCCGCTGCCGTTGATGCCGCCGCGCGTCACCATCACGTGCCCCAGACCCACTCTCGGGCCTTCCCCATTGGCCCATGGGCCACCTCTGCCGCTCCTATTTCACACAGGCCCTTCGATGCCCTCCGTCCCAGATCTTGA 873 0.5235 MTAQKEDLGLSLSLSFPHNAPTPLHLNLLSTPTYSSSPSSHNPHKPSWNDPFASSGEAGSFLRGIDVNRLPSAVDCEEEAGVSSPNSTVSSVSEKRSEREANGEEEHDTERGCFRGISDEEEGENCRKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELRALKLSPQFYMHMTPPTTLTMCPSCERVAVPSSAAVDAAARHHHVPQTHSRAFPIGPWATSAAPISHRPFDALRPRS 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02375 290 ProSiteProfiles 'Homeobox' domain profile. 123 183 IPR001356 GO:0003677
Viun2g02375 290 MobiDBLite consensus disorder prediction 93 114 - -
Viun2g02375 290 MobiDBLite consensus disorder prediction 33 49 - -
Viun2g02375 290 MobiDBLite consensus disorder prediction 33 52 - -
Viun2g02375 290 Coils Coil 182 219 - -
Viun2g02375 290 SMART halz 183 226 IPR003106 GO:0006355|GO:0043565
Viun2g02375 290 MobiDBLite consensus disorder prediction 76 114 - -
Viun2g02375 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 38 257 - -
Viun2g02375 290 Pfam HD-ZIP protein N terminus 4 100 IPR006712 GO:0005634
Viun2g02375 290 ProSitePatterns 'Homeobox' domain signature. 158 181 IPR017970 GO:0000981|GO:0006355
Viun2g02375 290 Pfam Homeobox associated leucine zipper 183 217 IPR003106 GO:0006355|GO:0043565
Viun2g02375 290 Pfam Homeodomain 127 181 IPR001356 GO:0003677
Viun2g02375 290 SUPERFAMILY Homeodomain-like 125 191 IPR009057 -
Viun2g02375 290 SMART HOX_1 125 187 IPR001356 GO:0003677
Viun2g02375 290 FunFam Homeobox-leucine zipper protein 18 116 188 - -
Viun2g02375 290 Gene3D - 131 181 - -
Viun2g02375 290 PRINTS Lambda-repressor HTH signature 154 163 IPR000047 GO:0003677
Viun2g02375 290 PRINTS Lambda-repressor HTH signature 163 179 IPR000047 GO:0003677
Viun2g02375 290 CDD homeodomain 127 184 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02375 Viun-Chr2 30823200 30825000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02375 1 290 Homeobox Transcription Factor Family AT5G47370 60.726 6.13e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun2g02375 HD-ZIP_N 7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02375 K09338 - gmx:100783851 439.113