Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02369 ATGGCAAACCAAAACCCTCTTCAACTTTCTGCTCTCAATCAAATAAAACTTCATCTTCTAGGAGAGCTTTCTCCTCTTCCAATCACACCCTCCTCTAACCTCAACAAAAGCAACTTTTCTTTTCTGTTTGAGGAACCAAACCCTACCTCCTCTCAATCAAGCTCTATCTGTTCTCAAACTTCAACTTCTCACTCATCTGCAACAATGGACGATTTTTTCTCTGATTTTTTCGACTTCCCAACTACTTCCACCACGGAAGACCAGTTCTCTGTTTTCGAAATCGAGTCCAAACCCCAAATAATCGATTACCAAACCCCGAATCCCCAACCTCAAACATCAACCTCGGAATTCACGTTTCCGAACACACATGACCGCAAGAAATCTCAGACAAATCGAAAACCGTCACTGCAAGTTTCTCTCCCGAAAAAGACGGAGTGGATCCAGTTCGGAGAGGGTGAGGTTGCGGGAAACGTGGTGCAGCAGGCTGCAGAAGAGAAGAAGCACTACAGAGGAGTTCGACAGAGACCGTGGGGGAAGTTCGCGGCGGAGATCCGCGACCCCAACAAGCGTGGCTCCAGGGTGTGGCTAGGGACGTTCGAAACGGCTCTGGAAGCCGCCAAAGCCTACGACCGAGCCGCGTTCAGGTTTCGCGGCTCCAAAGCCATCCTCAACTTTCCCCTCGAAGCCGGCGCCGATAACCGCAAACGCCAAAGGGAGGAGGAAGAGCCGGTGGTGGAAGTCGTTAAGAGGGAAAAGGTAGAAGATTTCGACGTCACCTGTTTTAGGGATGCTCCCTTAACGCCGTCTAGCTGGCCGGGCTTCTGGGGTTCCGATGCTAACGGAATCTTCGCCGTGCCGCCTCTGTCGCCGTTATCTCCTCATCCGGCGTTGGGTTATCCACAGCTTATGGTCGTGTGA 918 0.5131 MANQNPLQLSALNQIKLHLLGELSPLPITPSSNLNKSNFSFLFEEPNPTSSQSSSICSQTSTSHSSATMDDFFSDFFDFPTTSTTEDQFSVFEIESKPQIIDYQTPNPQPQTSTSEFTFPNTHDRKKSQTNRKPSLQVSLPKKTEWIQFGEGEVAGNVVQQAAEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFETALEAAKAYDRAAFRFRGSKAILNFPLEAGADNRKRQREEEEPVVEVVKREKVEDFDVTCFRDAPLTPSSWPGFWGSDANGIFAVPPLSPLSPHPALGYPQLMVV 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02369 305 PRINTS Ethylene responsive element binding protein signature 169 180 IPR001471 GO:0003700|GO:0006355
Viun2g02369 305 PRINTS Ethylene responsive element binding protein signature 208 228 IPR001471 GO:0003700|GO:0006355
Viun2g02369 305 SMART rav1_2 168 232 IPR001471 GO:0003700|GO:0006355
Viun2g02369 305 Pfam AP2 domain 168 218 IPR001471 GO:0003700|GO:0006355
Viun2g02369 305 SUPERFAMILY DNA-binding domain 168 227 IPR016177 GO:0003677
Viun2g02369 305 CDD AP2 167 226 IPR001471 GO:0003700|GO:0006355
Viun2g02369 305 MobiDBLite consensus disorder prediction 102 119 - -
Viun2g02369 305 ProSiteProfiles AP2/ERF domain profile. 168 226 IPR001471 GO:0003700|GO:0006355
Viun2g02369 305 FunFam Ethylene-responsive transcription factor 2 167 228 - -
Viun2g02369 305 PANTHER DNA-BINDING DOMAIN 114 238 IPR044808 GO:0003700|GO:0009873
Viun2g02369 305 Gene3D AP2/ERF domain 167 228 IPR036955 GO:0003700|GO:0006355
Viun2g02369 305 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02369 Viun-Chr2 30792205 30793440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02369 6 305 AP2-EREBP Transcription Factor Family AT4G17490 43.252 5.49e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g02369 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02369 K09286 - gmx:100808173 348.591