Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02346 ATGGGTAAACAAGGTCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGTAATGGACCACCCGAGAAGCCAGTACTATGCAATGCATGTGGGTCTCGGTGGAGAACAAAGGGAACTCTTGCAAATTATACCCCTTTACATGCTCGAACAGAAATTGATGCTTGTGGGGATCAAAAGGTTTCCAGGGTAAAGAACATATCAAATAAGAAGAGAGAAGTGACATTGCTCAAGCCAAATAATGACCATGATAATGAACTATCTGGAGGGTTTGCACCTGAGTACAGCCAGGGATGTCAAATCTTCGCAGATGAAGATGTAAGCAACCGATCAAGTTCAGGATCGGCTATTTCTAACTCAGAGAGCTGTGCACAATATGATGCCATGGATGCTTGTGATCTGACAGGTCCTGTTCAGTCAGTGGTTTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGCGTTGGTCGGCCAAAGCCTTCTTCTGTTGAGAAGCTAACAAAAGATTTATGTACCATTCTTCATGAACAACAGTCTTATTTTTCTGCATCTTCTGAGGAAGATCTTCTTTTTGAAAATGAAACACCAATGGTCTCTGTTGAGATAGGACATGGAAGCATTCTCATCAGGCATCCTAGCTCTATAGTCCGTGACGAAGAGTCTGAGGCTAGTTCTCTTTCAGTTGATAATAAACAATGTCCAACGAGTGAGGCATATTCTTATGTTGGTCCCATTACAACGCATAATGATTCTAGTCACCTGAAGCCATCATCTCTGGAAGTTGAAAAGATCATGAACTATACTGAACAAGGAAGGCAGCCGGAGCAACATAAAAGTGAAAATTCTCAACTTGAAAGATTACAAATCCTTGGCAATCATGAATCACCGCTGTGCTCTATAGATTTAAATGATATAGTAAACTATGAAGAGTTTTTGAGAATCTTGACAAATGAAGAGCAACAACAGTTACTGAAGTTACTTCCTGTGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGTTCTCAATTCAAGGAGAACTTAACATATTTTCAGCAGCTTCTTGCGGAAGGGGTTTTTGATATCTCATTGCGGGGGGCAAAACCTGAAGACTGCAAGACTTTGAAAAGACTTGCCATATCCAATCTGTCAAAGTCAAAATGGGTTGAACACTATAATTTTCTCAAGACGCAGAAATGTAAAAACAAAGCTGGAAAATTTGATTCTTTTGGATCTGCTGTTACAGCAACAACTAATGCAAACAAGAGAACTCGTGACAGCAGAAATCAAAACTTCCCAGAAATGAATACAGAAATGAGGAGCCCAAAGAAAATGATCACAAAGTTTGACAGTGAGGTCAAAGAGGGTGTAGAAGATGGTGCTTGCTATAGTCCAAAGAGTCTATTTACTTTGCCTACTGATGCTAGTTCACTCATGCTTGATTCATTAAACTTTGTGGAGGAGATTAATGAGCAGGATCTGCTGCTAGAGGTGCCATCCAACACTTCTTTTCCTCAGGCAGAGCTCTTGCACCCTAGTTCAAGCCATGGTGCTCAAGTCAGCACTAGTAGTAGCTCAGTGTATTCACATCTTACTCATCATTAA 1620 0.4093 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARTEIDACGDQKVSRVKNISNKKREVTLLKPNNDHDNELSGGFAPEYSQGCQIFADEDVSNRSSSGSAISNSESCAQYDAMDACDLTGPVQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFENETPMVSVEIGHGSILIRHPSSIVRDEESEASSLSVDNKQCPTSEAYSYVGPITTHNDSSHLKPSSLEVEKIMNYTEQGRQPEQHKSENSQLERLQILGNHESPLCSIDLNDIVNYEEFLRILTNEEQQQLLKLLPVVDTAKLPDSLKVMFNSSQFKENLTYFQQLLAEGVFDISLRGAKPEDCKTLKRLAISNLSKSKWVEHYNFLKTQKCKNKAGKFDSFGSAVTATTNANKRTRDSRNQNFPEMNTEMRSPKKMITKFDSEVKEGVEDGACYSPKSLFTLPTDASSLMLDSLNFVEEINEQDLLLEVPSNTSFPQAELLHPSSSHGAQVSTSSSSVYSHLTHH 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02346 539 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Viun2g02346 539 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Viun2g02346 539 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Viun2g02346 539 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 294 406 IPR044867 -
Viun2g02346 539 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Viun2g02346 539 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Viun2g02346 539 Gene3D - 3 77 IPR013088 GO:0006355|GO:0008270
Viun2g02346 539 MobiDBLite consensus disorder prediction 512 539 - -
Viun2g02346 539 PANTHER OSJNBB0038F03.10 PROTEIN 1 534 IPR044589 -
Viun2g02346 539 Pfam Asx homology domain 281 413 IPR028020 -
Viun2g02346 539 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Viun2g02346 539 Gene3D - 285 385 IPR038108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02346 Viun-Chr2 30686489 30691940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02346 1 516 C2C2-Gata Transcription Factor Family AT4G17570 49.813 1.97e-147 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Viun2g02346 ASXH 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02346 - - gmx:100798504 810.831