Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02341 ATGGATCCATGGAACCTTTCATCATCTTCCAAGTTTCTCTCTAAACAAGTTGCGTACGCTTCTCATCTCTACGCAGAAGAGATTCGCAACATGGGAAATTCCAGAGGTTCGCAGTTGACAATCTTGTACGATGGCCAAGTTGTTGTCTTTGATGATGTTCAAGCGGACAAAGCCAAGGATATCATATCTTTTGCCAACACAGGAATGTCTCAAAACCAGAACGGCTATGTTTGCTCATACCCTGCTGCAATTTCTGCTAGTTCCAGCAGACCGTTCCCTTTTCTTATGAATATCATCCCTACCACTGCCAACAATTCGGTTCAGGAGCACCCTCAAGCACCATCTAAATCTGTTATATGCGATCTACCTTTGGCTAGAAAAGCTTCACTTCATCGGTTCTTGGAGAAAAGAAAGGATAGAATTGCTGCCAGAGCACCATATCAAACAAGCAATCACATGGAAGCCCTTAATAAGCCAGGTGAATCCACGCCATGGCTCACCTTGGCATCTAAATCGCTACAAGATGAATCTGATTCTGATAGCAGCTCCAGCTTTGGGTTATTTTAA 567 0.4356 MDPWNLSSSSKFLSKQVAYASHLYAEEIRNMGNSRGSQLTILYDGQVVVFDDVQADKAKDIISFANTGMSQNQNGYVCSYPAAISASSSRPFPFLMNIIPTTANNSVQEHPQAPSKSVICDLPLARKASLHRFLEKRKDRIAARAPYQTSNHMEALNKPGESTPWLTLASKSLQDESDSDSSSSFGLF 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02341 188 ProSiteProfiles Tify domain profile. 32 67 IPR010399 -
Viun2g02341 188 SMART tify_2 32 67 IPR010399 -
Viun2g02341 188 MobiDBLite consensus disorder prediction 150 188 - -
Viun2g02341 188 Pfam Jas motif 123 148 IPR018467 -
Viun2g02341 188 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 34 159 IPR040390 -
Viun2g02341 188 Pfam tify domain 35 66 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02341 Viun-Chr2 30649949 30651396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02341 34 171 Tify Gene Family AT1G19180 38.889 8.36e-23 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Viun2g02341 tify 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02341 K13464 - gmx:100306332 257.299