Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02330 ATGAACTGTTTCTTCTTCAAAAAGAAATCAAAATCCCACCCAGAACTCCCAAAGGGACGAAAGAAGAAAAGCCAGGTTGTGAATGGAGCACCAAAGTCCCCAAGCTCGGTACCATCGCCGAGGAGCATAACAGAATTGTTCAAGGAGAAGGAGCGGAGTTTCAGAATTTTCAGTTTAAAAGAGCTTGTAGATGCAACAAATGGTTTCAATAGGATGCTGAAGATCGGAGAAGGTGGGTTTGGAAAAGTATACAGAGGAACCATTAATCCTCACCCTAAAGATGGAGCTGCTCCAATTGTAGTCGCAATAAAAAAACTTAACGCGCATGGCTTACAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTGAGCGTTGCCAACCATCCTAATCTGGTTAAGCTTCTGGGATACTGTTCTATAGACAGTCAAAGAGGAATCCAACGGTTGTTGGTGTATGAGTTCATGTCGAACAGGAGTCTGGAAGATCACCTTTTCAGTGTTGCTCTACCTCCTTTGCCTTGGCCGACAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTGTATTATCTCCACAACGGATTGGAGATTCAGGTGATCTACCGAGATTTCAAATCCTCAAATGTGTTACTGGACAAAGAATTTCATCCCAAACTTTCAGATTTTGGTCTCGCAAGAGAGGGTCCAATAGGTGATAAGACTCATGTATCTACTGCGGTAGTGGGGACACAGGGATATGCTGCACCAGAGTATGTTCAAACGGGTCATCTGAAAGTTCAGAGTGACATTTGGAGTTTTGGTGTGGTGCTTTATGAGATTCTCACAGGGAGACGAGCATTGAATAGAAACCGTCCAATAGGGGAACAAAAGCTTGTGGAATGGGTTAAACATTACCCTGCTAACAGTAGCAGGTTCAGCACCATCATTGACCCACGTCTCAAGAACCATTACTCTCTTGCTGCAGCTCGGAAACTAGCAAATTTGGCAGATTCTTGCTTGAAGAAGAATCCTGAAGAAAGACCCTCCATGAATCAGATAGTGGAAACCTTGAAGCAAGCATTGCAGGATTCACAAACCCAAAACACTTCACCTAATACCACTTCTAAATCCACACCATCGAGATTGGTTAAATAA 1137 0.4354 MNCFFFKKKSKSHPELPKGRKKKSQVVNGAPKSPSSVPSPRSITELFKEKERSFRIFSLKELVDATNGFNRMLKIGEGGFGKVYRGTINPHPKDGAAPIVVAIKKLNAHGLQGHKEWLAEVQFLSVANHPNLVKLLGYCSIDSQRGIQRLLVYEFMSNRSLEDHLFSVALPPLPWPTRLQIMLGAAQGLYYLHNGLEIQVIYRDFKSSNVLLDKEFHPKLSDFGLAREGPIGDKTHVSTAVVGTQGYAAPEYVQTGHLKVQSDIWSFGVVLYEILTGRRALNRNRPIGEQKLVEWVKHYPANSSRFSTIIDPRLKNHYSLAAARKLANLADSCLKKNPEERPSMNQIVETLKQALQDSQTQNTSPNTTSKSTPSRLVK 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02330 378 SUPERFAMILY Protein kinase-like (PK-like) 51 351 IPR011009 -
Viun2g02330 378 ProSiteProfiles Protein kinase domain profile. 69 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02330 378 Pfam Protein tyrosine and serine/threonine kinase 74 351 IPR001245 GO:0004672|GO:0006468
Viun2g02330 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Viun2g02330 378 PANTHER OS01G0588500 PROTEIN-RELATED 32 355 - -
Viun2g02330 378 MobiDBLite consensus disorder prediction 354 378 - -
Viun2g02330 378 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 156 365 - -
Viun2g02330 378 CDD STKc_IRAK 75 353 - -
Viun2g02330 378 MobiDBLite consensus disorder prediction 8 41 - -
Viun2g02330 378 Gene3D Phosphorylase Kinase; domain 1 48 155 - -
Viun2g02330 378 Gene3D Transferase(Phosphotransferase) domain 1 156 374 - -
Viun2g02330 378 ProSitePatterns Protein kinases ATP-binding region signature. 75 105 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02330 Viun-Chr2 30594439 30596415 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02330 1 351 Glycoside Hydrolase AT3G07070 43.526 1.24e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Viun2g02330 PK_Tyr_Ser-Thr 4.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02330 - - gmx:100782248 617.461