Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02287 ATGTTGATTCTCCCTTGGTTCATGTGTTCATTATTGGAGAATTCAGCTGTTTTGGTTTGGTTTGAAGGGATTCTATGTTCGAAGTCAACATTGATCTATTACATCAGTAGGGAGCCGAGTGATGGTGCCAAACCAGTTATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTCAGGGTTCTTGTACTTGACGGAGATAGAAGTTCTGCTGCTGAGATAGGAGAACAACTTGAGGCCATGGAGTATAATGTTTCTACCTTCTATGACGAGAATGAAGCTTTGTCAGCAATCTCAACTAGTCCTCAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGCAGCCTTGGAGGTTTCAAATTTCTTGAAAATGCAAAGGACTTGCCTACCATTATGGTTTCAAAGAACCAGTGCCTGAACACCACGATGAAGTGCATTGCGCTTGGTGCCGTTGAGTTTCTCAATAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCCTTTAATTCTGGGGCGAATGGTCTGTCTGAATCACTAAAACCTGTGAAAGAATCTGTAGAATCAGTGCTGCAGCTTCAAACAGGCAATGATGAACAAGATAAAACTCATAAAAGGACAATGTCGATTGATTTAGAGAATGTGTCCAGGTTTGATGATGATAACAATGAGCAATCTGTTTGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGAACACGGTCATTGGATGATGGAGATTGCCATGAGCAGACTAATTTTTCAACAGAAAAAGAAAGTGGAGAACATGATGGGGAATGCAAATCAGTCGAAACTTCATGTGAAAATTTGAATGCTGAAAGTTCTCCTCAACCAACTGAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGCGAGAGAGCTGTTTCACTGAATCTACATAATGAAAAGTTTCTCAGCAATGCAGATGGTCATACATCTCCAAAAAAGATGGAAGTTCTTAATGATTCATGTGAGATTAAAGCTAACAGGAAGAAGATGAAAGTAGACTGGACGCCCGAGCTGCATAAAAAATTTGTAAAGGCTGTTGAACAACTAGGTATTGATCAAGCCATTCCATCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGAGTGCACCTGGGGAAGAAGATCGAAAATGGCATAATCAAAGAGATGCAATGCAGAGGAGCTTTTATCTGCAAAGACCAATCATGGCCTACCCTCCCTATCATTCTACTCAAACCCTTTCTCCAGGTCCTATATATCCTATGTGGGGACAACCAGGAAGTCAAACAGCTGGTGTGCAGATTTGGGGGCCTCCTGCATACCCCTTGTGGCATCCTACAGAAAGTTGGAACTGGAAGCCTTATCCAGGGATGCATGTGGATGCTTGGGGATGCCCATTGTTTCCACCTCCTCAAGCTCCTGGTTTTCACTTCAATCAAAATATACCTGGATTGCAGACTCCTAAACCAGTGGATTATAGATTCATCATGCCACGTAGTTCCTTTGAGCATCATCCGTGTGTTGTTCCATGCATGCATGCATGCATGCAGGCAGAGGAGGTGGTAGACAAGGTTGTGAAAGAAGCAATTAACAAGCCATGGCTACCATTGCCCTTAGGACTCAAAGCACCTTCCACAGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATATCTAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTCCAAAACCCTGCTGA 1857 0.4308 MLILPWFMCSLLENSAVLVWFEGILCSKSTLIYYISREPSDGAKPVMVCTANDLQGWKDFPKGLRVLVLDGDRSSAAEIGEQLEAMEYNVSTFYDENEALSAISTSPQGFHVAIVEVSTSSSLGGFKFLENAKDLPTIMVSKNQCLNTTMKCIALGAVEFLNKPLSEDKLKNIWQHVVHKAFNSGANGLSESLKPVKESVESVLQLQTGNDEQDKTHKRTMSIDLENVSRFDDDNNEQSVCDKYPAPSTPQLKHGTRSLDDGDCHEQTNFSTEKESGEHDGECKSVETSCENLNAESSPQPTEPEETLIKEEEDFANGSKGERAVSLNLHNEKFLSNADGHTSPKKMEVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHKRQSAPGEEDRKWHNQRDAMQRSFYLQRPIMAYPPYHSTQTLSPGPIYPMWGQPGSQTAGVQIWGPPAYPLWHPTESWNWKPYPGMHVDAWGCPLFPPPQAPGFHFNQNIPGLQTPKPVDYRFIMPRSSFEHHPCVVPCMHACMQAEEVVDKVVKEAINKPWLPLPLGLKAPSTDSVLAELSKQGISSIPLGNKGSSAPKPC 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02287 618 Gene3D - 358 419 - -
Viun2g02287 618 SUPERFAMILY CheY-like 62 180 IPR011006 -
Viun2g02287 618 MobiDBLite consensus disorder prediction 287 304 - -
Viun2g02287 618 NCBIfam myb-like DNA-binding domain, SHAQKYF class 362 417 IPR006447 GO:0003677
Viun2g02287 618 MobiDBLite consensus disorder prediction 256 286 - -
Viun2g02287 618 Gene3D - 64 188 - -
Viun2g02287 618 SMART REC_2 64 174 IPR001789 GO:0000160
Viun2g02287 618 MobiDBLite consensus disorder prediction 241 255 - -
Viun2g02287 618 Pfam Myb-like DNA-binding domain 365 414 IPR001005 -
Viun2g02287 618 SUPERFAMILY Homeodomain-like 361 418 IPR009057 -
Viun2g02287 618 MobiDBLite consensus disorder prediction 206 307 - -
Viun2g02287 618 FunFam Two-component response regulator-like APRR2 63 188 - -
Viun2g02287 618 FunFam Two-component response regulator 358 420 - -
Viun2g02287 618 ProSiteProfiles Response regulatory domain profile. 65 178 IPR001789 GO:0000160
Viun2g02287 618 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 359 418 IPR017930 -
Viun2g02287 618 MobiDBLite consensus disorder prediction 211 239 - -
Viun2g02287 618 PANTHER TRANSCRIPTION ACTIVATOR GLK1 47 606 IPR044825 GO:0003700|GO:0045893
Viun2g02287 618 Pfam Response regulator receiver domain 66 172 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02287 Viun-Chr2 30365319 30370715 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02287 47 606 Response Regulator Gene Family AT4G18020 47.138 2.14e-137 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun2g02287 Response_reg 4e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02287 - - vun:114173738 1223.76