Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02284 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTCAGGGTTCTTGTACTTGACGGAGATAGAAGTTCTGCTGCTGAGATAGGAGAACAACTTGAGGCCATGGAGTATAATGTTTCTACCTTCTATGACGAGAATGAAGCTTTGTCAGCAATCTCAACTAGTCCTCAAGGCTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGCAGCCTTGGAGGTTTCAAATTTCTTGAAAATGCAAAGGACTTGCCTACCATTATGGTTTCAAAGAACCAGTGCCTGAACACCACGATGAAGTGCATTGCGCTTGGTGCCGTTGAGTTTCTCAATAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCCTTTAATTCTGGGGCGAATGGTCTGTCTGAATCACTAAAACCTGTGAAAGAATCTGTAGAATCAGTGCTGCAGCTTCAAACAGGCAATGATGAACAAGATAAAACTCATAAAAGGACAATGTCGATTGATTTAGAGAATGTGTCCAGGTTTGATGATGATAACAATGAGCAATCTGTTTGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGAACACGGTCATTGGATGATGGAGATTGCCATGAGCAGACTAATTTTTCAACAGAAAAAGAAAGTGGAGAACATGATGGGGAATGCAAATCAGTCGAAACTTCATGTGAAAATTTGAATGCTGAAAGTTCTCCTCAACCAACTGAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGCGAGAGAGCTGTTTCACTGAATCTACATAATGAAAAGTTTCTCAGCAATGCAGATGGTCATACATCTCCAAAAAAGATGGAAGTTCTTAATGATTCATGTGAGATTAAAGCTAACAGGAAGAAGATGAAAGTAGACTGGACGCCCGAGCTGCATAAAAAATTTGTAAAGGCTGTTGAACAACTAGGTATTGATCAAGCCATTCCATCTAGAATATTGGAGATAATGAAAGTGGAAGGTTTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAAGAGACAGAGTGCACCTGGGGAAGAAGATCGAAAATGGCATAATCAAAGAGATGCAATGCAGAGGAGCTTTTATCTGCAAAGACCAATCATGGCCTACCCTCCCTATCATTCTACTCAAACCCTTTCTCCAGGTCCTATATATCCTATGTGGGGACAACCAGGAAGTCAAACAGCTGGTGTGCAGATTTGGGGGCCTCCTGCATACCCCTTGTGGCATCCTACAGAAAGTTGGAACTGGAAGCCTTATCCAGGGATGCATGTGGATGCTTGGGGATGCCCATTGTTTCCACCTCCTCAAGCTCCTGGTTTTCACTTCAATCAAAATATACCTGGATTGCAGACTCCTAAACCAGTGGATTATAGATTCATCATGCCACGTAGTTCCTTTGAGCATCATCCGTGTGTTGTTCCATGCATGCATGCATGCATGCAGGCAGAGGAGGTGGTAGACAAGGTTGTGAAAGAAGCAATTAACAAGCCATGGCTACCATTGCCCTTAGGACTCAAAGCACCTTCCACAGATAGTGTGTTGGCTGAGCTCTCCAAACAAGGCATATCTAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTCCAAAACCCTGCTGA 1719 0.4328 MVCTANDLQGWKDFPKGLRVLVLDGDRSSAAEIGEQLEAMEYNVSTFYDENEALSAISTSPQGFHVAIVEVSTSSSLGGFKFLENAKDLPTIMVSKNQCLNTTMKCIALGAVEFLNKPLSEDKLKNIWQHVVHKAFNSGANGLSESLKPVKESVESVLQLQTGNDEQDKTHKRTMSIDLENVSRFDDDNNEQSVCDKYPAPSTPQLKHGTRSLDDGDCHEQTNFSTEKESGEHDGECKSVETSCENLNAESSPQPTEPEETLIKEEEDFANGSKGERAVSLNLHNEKFLSNADGHTSPKKMEVLNDSCEIKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHKRQSAPGEEDRKWHNQRDAMQRSFYLQRPIMAYPPYHSTQTLSPGPIYPMWGQPGSQTAGVQIWGPPAYPLWHPTESWNWKPYPGMHVDAWGCPLFPPPQAPGFHFNQNIPGLQTPKPVDYRFIMPRSSFEHHPCVVPCMHACMQAEEVVDKVVKEAINKPWLPLPLGLKAPSTDSVLAELSKQGISSIPLGNKGSSAPKPC 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02284 572 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Viun2g02284 572 SMART REC_2 18 128 IPR001789 GO:0000160
Viun2g02284 572 MobiDBLite consensus disorder prediction 165 193 - -
Viun2g02284 572 SUPERFAMILY CheY-like 16 134 IPR011006 -
Viun2g02284 572 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 560 IPR044825 GO:0003700|GO:0045893
Viun2g02284 572 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Viun2g02284 572 MobiDBLite consensus disorder prediction 160 261 - -
Viun2g02284 572 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Viun2g02284 572 Gene3D - 312 373 - -
Viun2g02284 572 Gene3D - 18 143 - -
Viun2g02284 572 FunFam Two-component response regulator-like APRR2 17 142 - -
Viun2g02284 572 FunFam Two-component response regulator 312 374 - -
Viun2g02284 572 NCBIfam myb-like DNA-binding domain, SHAQKYF class 316 371 IPR006447 GO:0003677
Viun2g02284 572 MobiDBLite consensus disorder prediction 210 240 - -
Viun2g02284 572 MobiDBLite consensus disorder prediction 241 258 - -
Viun2g02284 572 MobiDBLite consensus disorder prediction 195 209 - -
Viun2g02284 572 SUPERFAMILY Homeodomain-like 315 372 IPR009057 -
Viun2g02284 572 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02284 Viun-Chr2 30365319 30370961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02284 1 560 Response Regulator Gene Family AT4G18020 47.138 5.28e-138 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Viun2g02284 Response_reg 3.6e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02284 - - vun:114173738 1172.92