Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02260 ATGAATTACAGTGATAATATTCTCTCCGATAGTCCCGTTGTGAAGAACACAAACAATCAAGATAATTGGAAAGCAATTTGGATGAAAGACTCATCTTCCAATTCGGACAATGGATGGATGGTGCCCTATAAATACTATGACGTCAAGGGTCCCATTTCTGATTCAAACCCTAATGTTGACTCATCCAATTGGTTTTTGTGCAATGAGGTTCAATTGAAAGACATTTCATTAAAACGCATGGAAATTATATACAACGATACTGTGTCAAAGCTTGTTGCTTTGGGGCACAACGAGGATATTGCAGTGAAAGCGATTCTGTACAATGTTTATTGTTATGGCGCCAACGATTTGGCGACAGACCTTCTGCACAACACCTTGTCTTGTTTAGAAAAGGGGAGCTTGGACATGTATGAGTTGAAGCCTGCGTTCTCTGATTTGAAGAAGCTAGAGGAGCACACTCTGATGAATCTTGTGTCTTTGTTGCAAGAAGTGAGACTCGAGTTAGGCAAGGGTGATGCTATGTGGTGTCTCCTCATGAGCGATTACAATGTGTTAAAGGCAATTACCATCCATGTTCCTTTTGTAAGCATGTGTCCTCCTCCGTTAACCGAGCTTGAGAACGAGGAAGGGGGATTTAGAAAAGAGGGAGGCTCAGATATTCCTTTGAAAGGGTTCTTTTGTGGTAAGGAGATGACTTTACGTTTACAGAGAGACATTGAATTCCCGAAAAAATTTGATCTTACTCCTGCCATGATTTGTTCGTTGAAAAGCAATGTTGTAGCGTTTGCTGATGGATACAGGGCCAACTCAAAACATGTGCAGTCAAATGAAGGAAAATTTCCTGCCGTTAAGACTGTTACGAAATTGGACTCTTCATCTGCTTCTGTGTCTGCAGTCCTTGGTGATCTGCCTGGTGATTCTCTCAATATGAATGGCCATGATGACTTGAAGTCGGTGCTGAGTAAATTTCATGATCTAAATATTGATGAGAACTTGGAGTTTGTGGCAGAAGATGAGAAGCATTCGGTGATAGTCACTCTAGTGCATCAGATAAAGGATCTTGAGAAACAGGTCAAGGAGCGGAAAGATTGGGCACATGAGAAGGCAATCCAAGCCGCAAGAAAGCTAAACAGCTACCTAATTGAGCTGAAAACATTCAGGATAGAAAGAGAGGAGAATCAAAGACTGAAGAAGGGGAAAGAGGCAGATGAGGAGCTTGAGGACCCTACCATGGTGAGACTCTTAGAAATGGAGGAGGCCTTGAGAAAGGCTTGTGGTCAAATGGATCTAGCAACTGCAGGAGTTGGGAAACTTGAGACGGAAAAAGCTGAAATCAAAGCAGAGTTAGAAGCATGTAAACTAAGTGCATCAGAGTATGTCGCAAGCTGCTTGCAAATTGCAAAAAGGGAGAAGAAGTGCTTAAAGAAGCTTCTGGCTTGGGAAAAACAGGAAGCGAAGATAAAACAGGATATTTCAGATGAAAAGCAGAAGATTTTGGAGATACAGGAAGAGTTGGCTCAGATTAAACAACGTGCAAAAGAAGCTGAGGTCATGAGGGGTGAAGAGTTAAAGGCTAAGGAGGAAGCCTTAGCACTGATTGAAGAGGAACGCCGTTCTATGGAAGCAGCTGAGGCTAATAGAAAAAGAAACCTTAAGGCTTTAAGCCTGAAGATGGAGATAGATTTCCAGCGTCGCAAGGACGATCTTTTAAGACTGGAGCAGGAGATTTCGTGTCTTAAAGCATCTGCACAGTCGGCTATTTTGCCTACAAGCGAGTCTGAGGATGCAGAGCCCCACACAGAGATAATTGCTAAGCTTCTGCAAGAATTAGATAACGTGCCGGATTTTTCTGGAAAAGAAGCCGCCGGTAATACTGATAGAGAATGCGTTATATGTGGAAAAGATCAGGTTTCCGTAGTTTTCTTGCCATGTGCACACCAAGTTATGTGTGCCAGTTGCAGTGAAGAGTATGGGAGAAATGGCAAAGCTGTTTGTCCATGCTGCTGGGTTCCAATCGAACAGAGAATTCGTACATTTGGGGGAAGTTCGTAG 2052 0.4279 MNYSDNILSDSPVVKNTNNQDNWKAIWMKDSSSNSDNGWMVPYKYYDVKGPISDSNPNVDSSNWFLCNEVQLKDISLKRMEIIYNDTVSKLVALGHNEDIAVKAILYNVYCYGANDLATDLLHNTLSCLEKGSLDMYELKPAFSDLKKLEEHTLMNLVSLLQEVRLELGKGDAMWCLLMSDYNVLKAITIHVPFVSMCPPPLTELENEEGGFRKEGGSDIPLKGFFCGKEMTLRLQRDIEFPKKFDLTPAMICSLKSNVVAFADGYRANSKHVQSNEGKFPAVKTVTKLDSSSASVSAVLGDLPGDSLNMNGHDDLKSVLSKFHDLNIDENLEFVAEDEKHSVIVTLVHQIKDLEKQVKERKDWAHEKAIQAARKLNSYLIELKTFRIEREENQRLKKGKEADEELEDPTMVRLLEMEEALRKACGQMDLATAGVGKLETEKAEIKAELEACKLSASEYVASCLQIAKREKKCLKKLLAWEKQEAKIKQDISDEKQKILEIQEELAQIKQRAKEAEVMRGEELKAKEEALALIEEERRSMEAAEANRKRNLKALSLKMEIDFQRRKDDLLRLEQEISCLKASAQSAILPTSESEDAEPHTEIIAKLLQELDNVPDFSGKEAAGNTDRECVICGKDQVSVVFLPCAHQVMCASCSEEYGRNGKAVCPCCWVPIEQRIRTFGGSS 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02260 683 Coils Coil 484 518 - -
Viun2g02260 683 Coils Coil 435 455 - -
Viun2g02260 683 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 680 IPR013083 -
Viun2g02260 683 PANTHER OS05G0141500 PROTEIN 58 677 IPR046934 -
Viun2g02260 683 ProSiteProfiles Zinc finger RING-type profile. 629 668 IPR001841 -
Viun2g02260 683 Pfam Zinc finger, C3HC4 type (RING finger) 626 674 - -
Viun2g02260 683 CDD RING-HC_MIP1-like 624 677 - -
Viun2g02260 683 Pfam Family of unknown function (DUF6592) 80 189 IPR046527 -
Viun2g02260 683 Coils Coil 523 553 - -
Viun2g02260 683 SUPERFAMILY RING/U-box 609 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02260 Viun-Chr2 30244924 30248409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02260 567 674 C3H Transcription Factor Family AT3G06140 31.159 3.74e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02260 - - vra:106777712 1207.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02260 2 30244924 30248409 Viun3g04023 3 47829118 47834958 PCT