Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02259 ATGTTAAAGGTGGTCCTTTACTGCTTCACTACATCATACATACTCATGGACTTTTCTGAGTTATTAGAAACAGATAATGCCGGTTCCACTTGCCCCCTACCCCCGCCACCTCCATATACGCCTCCACCAAGTGGTCCGCAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTTTATCCAGTTGGAGCCACCTCTGTGTGTTGTGCTGTTTGCAATGCAGTCACAACCGTGCCACCACCTGAAATGGCCCAGTTAGTGTGTGGAGGCTGTCACACTTTACTCATGTACATCCGTGGAGCCACAAGTGTGCAATGCTCTTGCTGTCACACAGTCAATCTAGCTTTGGAAGCAAATCAGGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTGAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCCGTTTGCAGTTTTGTAACATTAGTTGGGGCCTCAACAAGTACTGCTGAGCAGAAATTCAGTACTTAA 504 0.4722 MLKVVLYCFTTSYILMDFSELLETDNAGSTCPLPPPPPYTPPPSGPQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTLVGASTSTAEQKFST 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02259 167 PANTHER PROTEIN LSD1 30 79 IPR040319 -
Viun2g02259 167 Pfam LSD1 zinc finger 127 151 IPR005735 -
Viun2g02259 167 Pfam LSD1 zinc finger 52 76 IPR005735 -
Viun2g02259 167 Pfam LSD1 zinc finger 89 113 IPR005735 -
Viun2g02259 167 NCBIfam zinc finger domain, LSD1 subclass 86 115 IPR005735 -
Viun2g02259 167 NCBIfam zinc finger domain, LSD1 subclass 124 154 IPR005735 -
Viun2g02259 167 NCBIfam zinc finger domain, LSD1 subclass 49 79 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02259 Viun-Chr2 30239108 30241982 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Viun2g02259 zf-LSD1 1.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02259 - - vun:114174628 320.857