Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02256 ATGGATTCTCGGGAACCGCACCACCAACCACAATTGCCAAACATGATGATGGGACCCACCTCCTACCCTTCCATGTTGGCCCCCGCCACCGCCCGATTTCCTTTCATCAGCAACAACCACATCCCCCACCACAACCCTCCTCCCCCACCACCACCTCCTCCCGAGCCTCTCAACGACAACCACCACGAGGCTGCGCTGAAGCAGTGCGCGCTCGGAATGGGTTCCTCGGAGTCCTCGAAGAAGAAAAGGGGCCGGCCCAGGAAATATTCCTCCGACGGGGGCAACATTGCCCTGGGCCTGGTTCCTAATCATCCCGCCGCTTCCTCCGCCGAATCTCCCGCCAAGAAACACCGCGGACGTCCCCCTGGTTCCGGCAAAAAACAAATGGACGCACTTGGAATCACTGGAACTGGCTTTACTCCGCATGTAATATCAGCTGAAGCTGGCGAGGACATTGCTGCAAAGATTATGGCTTTCTGTGAACAAGGGCCACGGACAGTTTGCATCCTCTCCGCCGTCGGTCCTATTCGGAATGTAACCATTCGACAACCGCCTTCCGCCTCTTCTCTGGCTTGTCCTGACGTATCCTATGAGGGTGAATTTGAGATCATATCCCTTTCCGGATTTACTGAACAATCTGAAAATAACAATGGTCATAACGGAATGCGTTCCTTAAATGTGAGTTTAGCAGGTCCTGATGGACGAGTATTGGGTGGCGAAGTTTCTGGAGCTCTTACTGCAGCTTCGGCAGTGCAGGTCGTTGTGGGTAGCTTTATTGCAGATGGAAAAAAGTCTAGCTCAAATAACGTAAAATCTGGACGTTCTACGACGCCATCATCGCAATTGTTAACTTTTGGTGCTCCTACGACTCCAACCACTCCTACTTCTCAGGGGCCTTCAACCGAGTCATCTGAGGATAATGAAAATAATAATTTTATTAAGGGCCCGGGAGGCCTGGGAGGCCCGGGACTCTCTAACAATGCTAGTCAGCCTATTCATCATAATCTGCAGATGTACCATCATCTATGGGCTGGCCATACTCAGCAGTGA 1050 0.521 MDSREPHHQPQLPNMMMGPTSYPSMLAPATARFPFISNNHIPHHNPPPPPPPPPEPLNDNHHEAALKQCALGMGSSESSKKKRGRPRKYSSDGGNIALGLVPNHPAASSAESPAKKHRGRPPGSGKKQMDALGITGTGFTPHVISAEAGEDIAAKIMAFCEQGPRTVCILSAVGPIRNVTIRQPPSASSLACPDVSYEGEFEIISLSGFTEQSENNNGHNGMRSLNVSLAGPDGRVLGGEVSGALTAASAVQVVVGSFIADGKKSSSNNVKSGRSTTPSSQLLTFGAPTTPTTPTSQGPSTESSEDNENNNFIKGPGGLGGPGLSNNASQPIHHNLQMYHHLWAGHTQQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02256 349 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 307 IPR039605 GO:0003680
Viun2g02256 349 ProSiteProfiles PPC domain profile profile. 136 280 IPR005175 -
Viun2g02256 349 MobiDBLite consensus disorder prediction 36 134 - -
Viun2g02256 349 MobiDBLite consensus disorder prediction 264 311 - -
Viun2g02256 349 CDD DUF296 140 258 IPR005175 -
Viun2g02256 349 SUPERFAMILY AF0104/ALDC/Ptd012-like 138 260 - -
Viun2g02256 349 Pfam Plants and Prokaryotes Conserved (PCC) domain 141 258 IPR005175 -
Viun2g02256 349 Gene3D - 141 271 - -
Viun2g02256 349 MobiDBLite consensus disorder prediction 1 23 - -
Viun2g02256 349 MobiDBLite consensus disorder prediction 264 330 - -
Viun2g02256 349 SMART AT_hook_2 115 127 IPR017956 GO:0003677
Viun2g02256 349 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Viun2g02256 349 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02256 Viun-Chr2 30220318 30224510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02256 64 349 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 42.771 2.63e-64 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02256 - - pvu:PHAVU_002G006700g 522.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02256 2 30220318 30224510 Viun3g04014 3 47710710 47716064 PCT