Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02254 ATGTCTATGGCTGGTTTGGATTTAGGCACGGCTTCGCGCTTCGTTCAAAGTCTCCAAAGACCAGACTTCAACCAACACCACCACCACCACGAACCCGAGGAAGACGACAAACAGTCAGACCCTTTTTCCACCGAAGATGGGGCGCAACAAGCCAGCCCCGGCGACCTGGTCGGGCGGCGGCCGAGAGGGCGGCCGCCAGGGTCGAAGAACAAGCCGAAGCCGCCGGTGATCATCACCAGGGAGAGCGCCAACACGCTCCGCGCGCACATCCTCGAGGTGGGCAGCGGCTGCGACGTGTTCGACAGCGTCGCTAGTTACGCGCGGCGGCGGCAGCGCGGGATCTGTATTTTGAGCGGCAGCGGCACCGTGACGAATGTGACCCTGCGGCAGCCGGCGGCGTCGGGGGCGGTGGTGACTCTTCACGGGAGGTTCGAAATACTGTCGCTGGCGGGATCGTTCCTTCCTCCGCCGGCGCCACCGGGAGCGACAAGTCTGAGCGTATACCTGGCCGGAGGACAGGGGCAGGTGGTGGGCGGGAGTGTGGTGGGAGAGTTGACCGCGGCGGGACCGGTGATTGTGATCGCGGCGTCGTTCACGAACGTGGCTTATGAACGTTTACCGTTAGAAGAAGAAGAGGAACAGGTTCAGATATCTGGTGGTGGCGGTGTGGGAAATAATAGTAATAATAATATTATTAACAATAACCCTTTTCCTGATCCTTCTTCGGGACTCCCTTTCTTCAGTTTGCCCATGAATGTTCAGTTCCCGGTGGATGGTTGGGCGGGAAACTCAGCTTCACGTTCACCATTTTGA 813 0.5916 MSMAGLDLGTASRFVQSLQRPDFNQHHHHHEPEEDDKQSDPFSTEDGAQQASPGDLVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFDSVASYARRRQRGICILSGSGTVTNVTLRQPAASGAVVTLHGRFEILSLAGSFLPPPAPPGATSLSVYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEEQVQISGGGGVGNNSNNNIINNNPFPDPSSGLPFFSLPMNVQFPVDGWAGNSASRSPF 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02254 270 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 219 IPR014476 GO:0003680
Viun2g02254 270 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 200 IPR005175 -
Viun2g02254 270 Gene3D - 86 218 - -
Viun2g02254 270 MobiDBLite consensus disorder prediction 213 235 - -
Viun2g02254 270 CDD DUF296 87 170 IPR005175 -
Viun2g02254 270 MobiDBLite consensus disorder prediction 22 37 - -
Viun2g02254 270 ProSiteProfiles PPC domain profile profile. 83 219 IPR005175 -
Viun2g02254 270 MobiDBLite consensus disorder prediction 1 76 - -
Viun2g02254 270 MobiDBLite consensus disorder prediction 219 235 - -
Viun2g02254 270 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 215 - -
Viun2g02254 270 FunFam AT-hook motif nuclear-localized protein 86 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02254 Viun-Chr2 30208889 30210516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02254 3 270 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 56.376 5.58e-94 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02254 - - gmx:100818680 355.525