Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02253 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAAATTATCACAATCCCAACACCACAAAAAACAACAACCTCAACCAAACCCTAACACCACCACCACCACCACCACCCCCTCCTCCTCTTGGATGTGGAACCCTACCCAACAACTGCACCACCAAGAAGACGACGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCACGCTCCTACACCTGCACATACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCAACCAACCCCCTCCTTCCTCCGCCACCGCCACCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTCGTTGCAAATGCTGGCTTGTGCCTCCTCTATCACTTGCCGCCAAGCCCTACTGCACCACCCTTCCCTAATTCCCCCTCTACCAATGCCCTTTCTTCTTCTCCCTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCCTCAAGCAATTTTCTGATGCAAACCTCCTTCAATTTCCCCGGTGCACCCTCAACTGGGATCAACACTGCTACTGTTTCCTCTTTCTACTCTTCCAAAGTGGACCAATCGGCAACTTCTTCCTCTTTTGCCACCGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGCCACAAACCAACACAAACCTCATAA 756 0.537 MAAEIGLVSMTQIQKLSQSQHHKKQQPQPNPNTTTTTTTPSSSWMWNPTQQLHHQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLNQPPPSSATATSSLPTSSPYINIPPQDLVANAGLCLLYHLPPSPTAPPFPNSPSTNALSSSPSPSTLLSISSYPSSNFLMQTSFNFPGAPSTGINTATVSSFYSSKVDQSATSSSFATGHLEELDLELRLGHKPTQTS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02253 251 Gene3D Classic Zinc Finger 75 127 - -
Viun2g02253 251 MobiDBLite consensus disorder prediction 115 132 - -
Viun2g02253 251 SUPERFAMILY beta-beta-alpha zinc fingers 81 111 IPR036236 -
Viun2g02253 251 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Viun2g02253 251 Pfam C2H2-type zinc finger 84 108 - -
Viun2g02253 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Viun2g02253 251 PANTHER OS07G0101800 PROTEIN 56 247 - -
Viun2g02253 251 MobiDBLite consensus disorder prediction 109 132 - -
Viun2g02253 251 MobiDBLite consensus disorder prediction 14 46 - -
Viun2g02253 251 SMART c2h2final6 84 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02253 Viun-Chr2 30191246 30192749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02253 41 247 C2H2 Transcription Factor Family AT4G17810 42.180 1.58e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Viun2g02253 zf-C2H2_6 2.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02253 - - gmx:100818142 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02253 2 30191246 30192749 Viun2g02253 2 30191246 30192749 ECH
Viun2g02253 2 30191246 30192749 Viun3g04010 3 47630508 47632017 PCT