Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02250 ATGAACGGAACAAATTTACACACCTCCATGGACGCATCAGAACCCAGCTGGTTTTCAGATTTGCTGTTGCTGGAAACTGATGATTGCAACTTGTTCCGACAATGTCTTGAAGATGATGAAGAGTTACTTTCCCTTGAGATAGCAAGTGCCCTAGAGAACTTGCAGCCGCCGCAGCATCAGCAACCTTTGTCTTTGGAGAGTCACATGTTGTATTCTGAAACAACTAATTTGAACATCAAGCAGTTCAAAACGAATTTCTGTGGTTGGAACTCATCCCTCAACTCCACCAAACACTTTTCACCCAATCTTTCCTCTTCTTCCTCTTCCTCATCTTCACCACCCTCCCAGATTATGTTTTTAGACAACTCAAACTCATTTTCTGTGGAGAACACTCACTTTCAAGGGATTGTTTCTGCTGCGCTGAACCCGCAACCTAACAAAGGTGTTTCAGTTTCAACCCCAGAGACCGGAAAAAGATCATCAGAAAATCTGAACTATGAAACTAAAGGCCCCAAAGGCCATGGAAGCTCCAAGATATCCGGTGGTCACAGTCGGGATCATATCATCGCGGAAAGAAAACGGAGAGAGAACATGAGCCAGGGCTTAATTGCTCTAGCTGCTCTCATTCCAGGCTTAAAGAAGATGGACAAGGCTTCAGTGCTGGGAGAAGCTATCAAGTATGTGAAAGAGCTTCAAGAGCGTCTGAAAATTCTTGAAGAAAAGAACAACAAGAACAGAGATGAGAAGTCTGTGGTGGTGATGGTGAAGAAGTCATGGCTGAGCTACCACGATGGTTCACCTTCAGCCGCCGCCGATGGTGATAGGTGTTTCAGGGAAAGCCTCCCTCGTGTAGAAGCACGAGTGTCAGATAACGATGTGCTCCTTCGCATCCACTGCCAAAACCGAAAAGGTCTTCTGCTGAAAATACTTGTGGAGATTCAAAACCTTCATCTCTTCGTTGTGAATAGCAGTGTCCTGTCTTTTGGGGAGTCCATTATCGATATCACCATTGTTGCTCAGATGGGGACGGAGTACAAGTTGACGGTAAATGACCTTGTAAAGAACCTACGCATGGCTACTTTGAAATCCATGTCATAA 1098 0.4499 MNGTNLHTSMDASEPSWFSDLLLLETDDCNLFRQCLEDDEELLSLEIASALENLQPPQHQQPLSLESHMLYSETTNLNIKQFKTNFCGWNSSLNSTKHFSPNLSSSSSSSSSPPSQIMFLDNSNSFSVENTHFQGIVSAALNPQPNKGVSVSTPETGKRSSENLNYETKGPKGHGSSKISGGHSRDHIIAERKRRENMSQGLIALAALIPGLKKMDKASVLGEAIKYVKELQERLKILEEKNNKNRDEKSVVVMVKKSWLSYHDGSPSAAADGDRCFRESLPRVEARVSDNDVLLRIHCQNRKGLLLKILVEIQNLHLFVVNSSVLSFGESIIDITIVAQMGTEYKLTVNDLVKNLRMATLKSMS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02250 365 MobiDBLite consensus disorder prediction 138 184 - -
Viun2g02250 365 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 247 IPR036638 GO:0046983
Viun2g02250 365 Coils Coil 221 248 - -
Viun2g02250 365 PANTHER BHLH TRANSCRIPTION FACTOR 57 362 - -
Viun2g02250 365 SMART finulus 188 237 IPR011598 GO:0046983
Viun2g02250 365 Pfam Helix-loop-helix DNA-binding domain 187 232 IPR011598 GO:0046983
Viun2g02250 365 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 182 231 IPR011598 GO:0046983
Viun2g02250 365 Gene3D - 183 254 IPR036638 GO:0046983
Viun2g02250 365 MobiDBLite consensus disorder prediction 138 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02250 Viun-Chr2 30164328 30167163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02250 166 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.179 1.98e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g02250 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02250 - - vun:114174269 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02250 2 30164328 30167163 Viun3g03999 3 47520511 47523157 PCT