Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02249 ATGATGGAAATCGCGTCCACCAACTACTTGCCTGAACTTGAAATGGAGTATCCAACTTTTGTTGATCAGTACCAGATGGATTCTTTTGCATGTTCACTGGATGATTTTGACTTCGAGTCTTTCTCAGGATCCCCAGAGAGCACTCCAAATTGTTTCCCAGCTCAAAGTCCTGATCACTCATTTACCCCTCCAAGACCAACCAAGAGGCTCAACAACACATTCAGTACCTTCAAAACTTGTTCCACTGACTCAATTTCCCACAGTGTTTCCGCTTCTCCATCCTCCCAGCTCATTTCTTTTGGCCACTTTAATCCTTCACCGCGTGCTTCCCAACAATTTCGCAACTTCCATGTGAAGCCTAAAAGCGAAAACCCGTCCAGTGAGAACATGGACTTCACAGACTTCGTTTCTCAAGGTTCATATCAGGACAAAAGTTTCTTCATTTCTGATAATCGAACGAACCAGGTTGGCATAACTGCTAGGAACCCAATCCAAGCGCAAGAGCACGTAATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATCGCTCTTTCTGCCGTCCTCCCAGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAGTACGTGAAACAACTGCGAGAGCGCGTGCAAACTCTAGAGGAGAAAACAGCAAAGATCACTACTGGTTCTTCAGTCCTGGTGAAAAGATCCATTCTCTTTGCTGACGCTGAAAATTCTGACAGCCACTGCGACAATTCACTCCCTGAAATCGAAGTAAGAGTTTCTGGGAAAGACGTACTCATCAGAACTCAAAGCGATAAACACAGTGGCCGTGCGGCAGTGATTCTCAGCGAATTAGAAAAGCTTCATTTCATTGTCCAGAGTAGCAGCCTTTTGCCCTTCGGCAATAACAATATTGACGTAACCATTATTGCTCAGATGAAGGAAAACTACATGGCAGCAAAGGATCTCCTAGGAAGGTTACGAAAGGCTTTGAAGCAAGTTGATGGAGCCTAA 1020 0.4529 MMEIASTNYLPELEMEYPTFVDQYQMDSFACSLDDFDFESFSGSPESTPNCFPAQSPDHSFTPPRPTKRLNNTFSTFKTCSTDSISHSVSASPSSQLISFGHFNPSPRASQQFRNFHVKPKSENPSSENMDFTDFVSQGSYQDKSFFISDNRTNQVGITARNPIQAQEHVIAERKRREKLSQRFIALSAVLPGLKKMDKASVLGDAIKYVKQLRERVQTLEEKTAKITTGSSVLVKRSILFADAENSDSHCDNSLPEIEVRVSGKDVLIRTQSDKHSGRAAVILSELEKLHFIVQSSSLLPFGNNNIDVTIIAQMKENYMAAKDLLGRLRKALKQVDGA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02249 339 Coils Coil 312 332 - -
Viun2g02249 339 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Viun2g02249 339 MobiDBLite consensus disorder prediction 41 66 - -
Viun2g02249 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 213 IPR011598 GO:0046983
Viun2g02249 339 CDD bHLH_AtNAI1_like 166 238 - -
Viun2g02249 339 Gene3D - 159 229 IPR036638 GO:0046983
Viun2g02249 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 229 IPR036638 GO:0046983
Viun2g02249 339 PANTHER BHLH TRANSCRIPTION FACTOR 14 333 - -
Viun2g02249 339 Coils Coil 203 223 - -
Viun2g02249 339 SMART finulus 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02249 Viun-Chr2 30153422 30155597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02249 2 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.901 3.30e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Viun2g02249 HLH 4.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02249 - - var:108334767 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02249 2 30153422 30155597 Viun2g02249 2 30153422 30155597 ECH
Viun2g02249 2 30153422 30155597 Viun3g03997 3 47520511 47523264 PCT