Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02248 ATGCGTGTCCTCTTTCTATTTCTGTTTTTCCATCTTCATCAAACCCTTTCGTTGCCATTCTCAGACTACAACGTCCTTATCTCTATTCGTTCAGCCATTACCGACGATGCCACTCCACCCGTTCTCTCTTCCTGGAATGCCTCCACCTCTCACTGTTCCTGGCTCGGCGTCACATGTGACGCCCACCGCCACGTCGTCGCTCTCAACCTCACCGGACTCAACCTCTCCGGGACTCTCTCTGCCGACATAGCTCACCTCCCATTCCTCTCCAATCTCTCGCTCGCCGACAATAAGTTCTCCGGCCCCATCCCCCCGGCGCTCTCGTCCCTCTCTGCCCTCCGCCTCCTCAACCTCTCCAACAATGGCTTTAACCAAACCTTCCCCCCGGAGCTCTCGCGCCTCCAGAGCCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGCACTCCCTCTCGCCGTCGCGCAGATGCTTAACCTCCGCCACTTGCATCTCGGCGGGAACTTCTTCTCCGGCCGGATCCCGCCGGAGTACGGGCAGTGGCCGCGCCTCGAGTACCTTGCTGTCTCCGGAAACGAGCTCGACGGGAAAATACCGCCGGAGATCGGGAACCTGACCAGCCTCCGGGAGCTCTACATCGGCTACTTCAACACCTACGTGGACGGCATTCCGCCGGAGATCGGAAACTTGTCAGAGTTGGTGAGGCTGGACGCCGCGTATTGTGGTTTGTCCGGCGAGATTACACCGGCGCTGGGTAAGCTGCAGAAGCTGGACACGCTGTTCCTTCAGGTGAATGCGCTAACAGGGCCTCTGACGCCGGAGCTGGGGAACCTGAAGAGCCTGAAATCGATGGATTTGTCTAACAACATGCTCTCCGGCGAGATTCCCGCGAGTTTCAGCGAGCTCAAGAATATCACGCTGCTGAACCTGTTCAGGAACAAGCTTCACGGAGCAATACCGGAGTTTATAGGGGACCTTCCGGCGCTGGAAGTGGTGCAACTGTGGGAAAACAACTTCACAGGTAGCATTCCTGAGGGTTTAGGCAAGAACGGGAGACTGAACGTTGTTGATCTTTCTTCTAACAAATTAACCGGGACTTTGCCTCCTTACCTCTGTTCTGGGAACACTCTTCAGACTTTGATAACTCTCGAGAATTTCTTGTTTGGTCCAATTCCGGAAGCGCTTGGGAGTTGTAAATCCCTTACTCGGATTCGAATGGGAGAGAACTTTCTAAATGGGTCCATTCCGAAAGGGCTTTTTGGACTTCCCAAACTGACCCAGGTTGAGCTTCAGGATAATTATCTCTCTGGAGAGTTTCCGGAGGCGGGTTCTGTAGCTGTTAATCTTGGTCAGATAACTCTATCTAACAATCAGCTTTCTGGGGCCTTGCCTCCTTCTATTGGCAACTTCTCCAGCGTGCAGAAGCTCCTTCTTGACGGTAACATGTTTTCGGGTCGGATACCTCCTCAGATTGGGAGGTTACAACAGCTCTCAAAGATTGATTTTAGTGGCAACAAGTTCTCGGGTCCTATTTCACCTGAGATCAGTCAATGTAAGTTGTTGACTTTTCTGGACCTTAGCCGCAATGAACTCTCCGGAGAGATCCCAAATGAGATTACTGGAATGAGGATATTGAATTACCTTAATCTCTCGAGTAATCATTTAATGGGTAGCATTCCCTCTTCAATATCCTCGATGCAAAGCTTAACTTCTGTTGATTTTTCGTACAACAATCTGTCTGGTTTGGTGCCCGGTACGGGTCAGTTCAGCTACTTCAACTACACGTCTTTCCTTGGAAACCCTGACCTCTGTGGTCCCTATTTAGGTGCTTGCAAGGATGGGGTTACCAATGGTGCACATCAACCTCATGGTAAGGGACTCTCGTCTTCTGTGAAGCTTCTACTTGTTGTCGGTTTGCTTTTATGTTCCATTGCTTTTGCTGTGGCGGCAATATTTAAGGCTCGATCACTGAAGAAGGCCAGTGAGGCTCGTGCATGGAAGTTGACTGCATTCCAACGTTTGGACTTCACTGTTGATGATGTTTTGCATTGCTTGAAGGAGGATAATATTATAGGCAAAGGAGGTGCAGGCATTGTATACAAAGGGGCTATGCCTAACGGGGATCATGTTGCCGTGAAAAGGCTTCCCGCTATGAGTAGAGGCTCTTCCCACGACCACGGGTTCAATGCGGAGATTCAGACACTTGGGCGAATCCGACACAGGCACATTGTTAGACTGCTGGGTTTCTGTTCAAACCATGAGACTAACCTTTTGGTCTATGAGTACATGCCCAATGGAAGCTTGGGTGAGGTTCTTCATGGAAAGAAGGGAGGTCATTTGTATTGGGACATAAGGTATAAAATTGCCGTGGAGGCTGCCAAAGGGCTTTGCTATCTGCACCATGATTGTTCTCCGCTCATTGTTCACCGTGATGTGAAGTCAAACAACATCCTTCTTGATTCTAATAATGAAGCCCATGTTGCTGATTTTGGGCTTGCCAAGTTCCTGCAAGATTCTGGGACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCAGAGTATGCCTACACATTGAAAGTTGATGAGAAAAGCGATGTGTACAGCTTTGGCGTGGTTCTTTTAGAACTTGTAACTGGCAGGAAACCAGTTGGGGAATTTGGTGACGGTGTGGACATTGTGCAATGGACAAGGAAAATGACGGACTCTAATAAGGAAGAAGTTCTTAAAGTTCTTGATCCTAGGCTTTCGTCGGTTCCCCTCCACGAACTGATGCATGTTTTCTATGTAGCCATGCTATGTGTTGAAGAACAGGCCGTAGAGAGACCAACTATGCGCGAAGTTGTCCAAATACTGACAGAGCTTCCAAAGCTACCTGGTTCTAAACAGGATGACTCAACAGAATCCTCTTTGACATCATCCAATGCTTTAGAATCTCCATCCACAGCCTCTAAAGATCATCACAATCCTTCTCAATCTCCACCAGCCGATCTTCTTAGCATCTGA 3021 0.4945 MRVLFLFLFFHLHQTLSLPFSDYNVLISIRSAITDDATPPVLSSWNASTSHCSWLGVTCDAHRHVVALNLTGLNLSGTLSADIAHLPFLSNLSLADNKFSGPIPPALSSLSALRLLNLSNNGFNQTFPPELSRLQSLEVLDLYNNNMTGALPLAVAQMLNLRHLHLGGNFFSGRIPPEYGQWPRLEYLAVSGNELDGKIPPEIGNLTSLRELYIGYFNTYVDGIPPEIGNLSELVRLDAAYCGLSGEITPALGKLQKLDTLFLQVNALTGPLTPELGNLKSLKSMDLSNNMLSGEIPASFSELKNITLLNLFRNKLHGAIPEFIGDLPALEVVQLWENNFTGSIPEGLGKNGRLNVVDLSSNKLTGTLPPYLCSGNTLQTLITLENFLFGPIPEALGSCKSLTRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGEFPEAGSVAVNLGQITLSNNQLSGALPPSIGNFSSVQKLLLDGNMFSGRIPPQIGRLQQLSKIDFSGNKFSGPISPEISQCKLLTFLDLSRNELSGEIPNEITGMRILNYLNLSSNHLMGSIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVTNGAHQPHGKGLSSSVKLLLVVGLLLCSIAFAVAAIFKARSLKKASEARAWKLTAFQRLDFTVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLYWDIRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNNEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWTRKMTDSNKEEVLKVLDPRLSSVPLHELMHVFYVAMLCVEEQAVERPTMREVVQILTELPKLPGSKQDDSTESSLTSSNALESPSTASKDHHNPSQSPPADLLSI 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02248 1006 Gene3D Transferase(Phosphotransferase) domain 1 764 982 - -
Viun2g02248 1006 MobiDBLite consensus disorder prediction 962 1006 - -
Viun2g02248 1006 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 655 763 - -
Viun2g02248 1006 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 80 323 - -
Viun2g02248 1006 SMART serkin_6 686 934 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02248 1006 Pfam Leucine Rich Repeat 160 177 IPR001611 GO:0005515
Viun2g02248 1006 Pfam Leucine Rich Repeat 281 303 IPR001611 GO:0005515
Viun2g02248 1006 Gene3D Ribonuclease Inhibitor 488 613 IPR032675 -
Viun2g02248 1006 MobiDBLite consensus disorder prediction 965 1006 - -
Viun2g02248 1006 Gene3D Phosphorylase Kinase; domain 1 652 763 - -
Viun2g02248 1006 ProSiteProfiles Protein kinase domain profile. 686 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun2g02248 1006 SUPERFAMILY L domain-like 351 609 - -
Viun2g02248 1006 SUPERFAMILY RNI-like 68 388 - -
Viun2g02248 1006 Gene3D Ribonuclease Inhibitor 130 220 IPR032675 -
Viun2g02248 1006 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 764 974 - -
Viun2g02248 1006 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 331 616 - -
Viun2g02248 1006 Pfam Leucine rich repeat N-terminal domain 21 60 IPR013210 -
Viun2g02248 1006 SMART LRR_typ_2 110 134 IPR003591 -
Viun2g02248 1006 SMART LRR_typ_2 327 351 IPR003591 -
Viun2g02248 1006 SMART LRR_typ_2 158 182 IPR003591 -
Viun2g02248 1006 SMART LRR_typ_2 279 303 IPR003591 -
Viun2g02248 1006 SMART LRR_typ_2 567 590 IPR003591 -
Viun2g02248 1006 SMART LRR_typ_2 352 375 IPR003591 -
Viun2g02248 1006 ProSitePatterns Serine/Threonine protein kinases active-site signature. 808 820 IPR008271 GO:0004672|GO:0006468
Viun2g02248 1006 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 220 958 - -
Viun2g02248 1006 Gene3D Ribonuclease Inhibitor 21 129 IPR032675 -
Viun2g02248 1006 Gene3D Ribonuclease Inhibitor 221 378 IPR032675 -
Viun2g02248 1006 SUPERFAMILY Protein kinase-like (PK-like) 682 957 IPR011009 -
Viun2g02248 1006 Pfam Protein tyrosine and serine/threonine kinase 688 957 IPR001245 GO:0004672|GO:0006468
Viun2g02248 1006 Gene3D Ribonuclease Inhibitor 385 487 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02248 Viun-Chr2 30143965 30148351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02248 15 985 Receptor kinase-like Gene Family AT5G65700 80.428 0.0 1586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Viun2g02248 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02248 - - gmx:548032 1787.7