Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02240 ATGGGTTTTGATCACGACGCCACTACCTCTGGCCTTCACCTCGTTCTAGGGTTATCTTTGACGGCTACCACCACTCCATCCACCAAGCCTCAAGATCATCATCATCATCATCATCATCATTTTTGTGTTGTTAAGCCTACGCCAACCAAGCCTAATTCCCCCAATGAACCGTCTTTGACGTTGGGTTTGTCTGGCGAGAGCTGCCACCTAGCCAAGCAAGTGCCCACCAACAGTAAGGTTTATTGTGAGGATCCTCTCGACATGTCTCGACAGACGTCACCTCACAGCGTGGTCTCGTCTTTCTCGACCGGGAGGGTTGTGAAGAGGGAGAGAGATCTTAGCTTTGAAGAGGTAGAGGCAGAGGCAGAGGCAGAAGAGAGGGTTTCTTCAAGAGTCAGCGACGAAGAAGAAGACGGCACCAATGCTAGGAAGAAACTCAGACTCAGTAAAGAACAATCTGCACTACTAGAGGAGAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCCAGAGAGCTAAATCTACGGCCTCGACAAGTTGAAGTGTGGTTTCAGAATCGGAGAGCCAGAACAAAGCTGAAGCAGACAGAGGTGGACTGTGAGTTCTTAAAGAAATGCTGCGAAACGTTGACGGACGAAAACAGAAGGTTAAAGAAGGAGCTGCAGGAGCTGAAGGCACTGAAACTGGCTCAACCCTTGTACATGCCTATGCCTGCGGCAACACTCACCATGTGCCCTTCTTGCGAGAGGCTCGGTGGCGTTAGCGATAACGCTTCCAATAAAAGCCCTTTCTCCATGGCTCCCAAGACCCACTTCTACAACCCCTTTGCCAATCCTTCTGCAGCATGTTGA 867 0.4971 MGFDHDATTSGLHLVLGLSLTATTTPSTKPQDHHHHHHHHFCVVKPTPTKPNSPNEPSLTLGLSGESCHLAKQVPTNSKVYCEDPLDMSRQTSPHSVVSSFSTGRVVKRERDLSFEEVEAEAEAEERVSSRVSDEEEDGTNARKKLRLSKEQSALLEESFKQHSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTMCPSCERLGGVSDNASNKSPFSMAPKTHFYNPFANPSAAC 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02240 288 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 16 271 - -
Viun2g02240 288 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Viun2g02240 288 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Viun2g02240 288 Pfam Homeobox associated leucine zipper 199 233 IPR003106 GO:0006355|GO:0043565
Viun2g02240 288 MobiDBLite consensus disorder prediction 117 148 - -
Viun2g02240 288 Gene3D - 147 197 - -
Viun2g02240 288 FunFam Homeobox-leucine zipper protein 18 126 204 - -
Viun2g02240 288 SMART HOX_1 141 203 IPR001356 GO:0003677
Viun2g02240 288 SUPERFAMILY Homeodomain-like 141 207 IPR009057 -
Viun2g02240 288 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Viun2g02240 288 Coils Coil 205 235 - -
Viun2g02240 288 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Viun2g02240 288 CDD homeodomain 143 200 IPR001356 GO:0003677
Viun2g02240 288 MobiDBLite consensus disorder prediction 24 60 - -
Viun2g02240 288 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02240 Viun-Chr2 30065597 30067291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02240 1 288 Homeobox Transcription Factor Family AT4G37790 59.000 9.66e-95 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Viun2g02240 Homeodomain 4.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02240 K09338 - gmx:100784129 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02240 2 30065597 30067291 Viun3g03986 3 47339842 47341362 PCT