Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02238 ATGGGAAGGGCTCCTTGTTGTGACAAAGCCAACGTCAAGAAAGGTCCATGGTCACCTGAAGAAGATGCTAAACTCAAGGCTTATATTGAGCACCATGGTACTGGTGGCAACTGGATAGCCTTGCCCCAGAAAATAGGCCTTAAGAGATGTGGGAAAAGCTGTCGTCTTAGATGGCTAAATTATCTTCGACCAAACATCAAACATGGGGGATTCTCAGAAGAAGAAGACAACATCATCTGCAGCCTTTATGTCAGTATTGGAAGCAGGTGGTCAATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGATATAAAGAACTATTGGAACACGAGGCTAAAGAAGAAGCTTCTTGGGAAACAAAGAAAGGAACAGCAGGCTCAAGCTCGCCGTGTCAGCAACAATCAGCAGAAGCAAGATGTGAAAAGAGAAACCGAGAATTTGATAGCAGCTTCTGAAGTCATCAATCAAGTCCCTTATTGGTCTGCAGAATATTCTTCTGTGCCTCTCCCAGTCACTGATGTTTCCTTTCAACACTACGGTCTGAACAATCAAACTTCTCTCAGGAACTTGATGGTTAACAGACTAGAGGGAATTAGATTTTCCAACGATCATCATCAGCATCAGCAGCAGCAGCCATACACCAATGCATGTGAAATTCCCTCCCTGCCAAACCAGGTTTTTCCAACCATGGTAAATCATGTGGCCGTGGTGAGTGATGAAAACAATAGCGTCACTTATCAGCCATCAAATATATTTCATGGGTTTGAAAACTTCCCGGGTGATTTCTGCGAACTGGTCTGCGCGAACTCGCAACAAATGGATCGGTCAATGGAGGGTTTTAACTACGGAATGGAATCCATGGACGTGATGAGCAATGGTGGTAGCAGCAACACAACTTCAACGGAAAGCACTAGTTGGGGTGACATGAACTCTTTGGTCTACTCACCTTTGGTTTCTGACTATGAAGGTTGCCGACAGGGAAATCCTCGAGATGTTGTTGCTTTCGAAGAGTGTAACTACTTTGGAATGCAGATGCAATAA 1044 0.4454 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEHHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGKQRKEQQAQARRVSNNQQKQDVKRETENLIAASEVINQVPYWSAEYSSVPLPVTDVSFQHYGLNNQTSLRNLMVNRLEGIRFSNDHHQHQQQQPYTNACEIPSLPNQVFPTMVNHVAVVSDENNSVTYQPSNIFHGFENFPGDFCELVCANSQQMDRSMEGFNYGMESMDVMSNGGSSNTTSTESTSWGDMNSLVYSPLVSDYEGCRQGNPRDVVAFEECNYFGMQMQ 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02238 347 CDD SANT 71 113 IPR001005 -
Viun2g02238 347 SMART sant 13 64 IPR001005 -
Viun2g02238 347 SMART sant 67 115 IPR001005 -
Viun2g02238 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Viun2g02238 347 MobiDBLite consensus disorder prediction 120 143 - -
Viun2g02238 347 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Viun2g02238 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Viun2g02238 347 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Viun2g02238 347 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Viun2g02238 347 Gene3D - 7 68 - -
Viun2g02238 347 CDD SANT 16 62 IPR001005 -
Viun2g02238 347 Gene3D - 70 146 - -
Viun2g02238 347 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Viun2g02238 347 PANTHER OS09G0431300 PROTEIN 1 296 - -
Viun2g02238 347 FunFam Transcription factor RAX3 70 147 - -
Viun2g02238 347 FunFam Transcription factor RAX3 7 68 - -
Viun2g02238 347 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02238 Viun-Chr2 30034547 30036498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02238 1 316 MYB Transcription Factor Family AT3G49690 46.547 8.90e-89 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Viun2g02238 Myb_DNA-binding 9.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02238 K09422 - gmx:106795158 597.43