Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02235 ATGAAGCCTATAGAAAATGGCGAAACCGTTGACATAAACTATCAAAATAGCTGGTTAGGTTTCTCCCTCTTCCCGCAAATGAATATAACTGTTCCTTCACACTCTCATCAAACACACCCTTCATCTGCTGCTGCTGAAACCGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGACTACTCCAAGGTGAACATGTTGGAATGTGTTCTCCCTTGCCTATCATGCCCCTTAAATCCAGTGTCTCGTTCTATGGAATAGAAGCTGTGAGCAGATCACAAGCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGCTTTACAACCAACTCTCATGCCATGGATCGAACGACCCAAATAACCAAAGCCATGTACAAGACAACATCAGCCAGCAACAGCTGCCATATTATTCTTCCTTAAGAAACAGCCATGATGTGATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGCTGGTTCTCAAGGGACTTTTCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATACTGGATCAGTAGCATATGGGGATTTACGTTCGTTGAATTTGTCTGTGAGCCCTACCAGACGATCAAGCTGTGTTACAGGTTCGCCTGCTATCACTGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGCAAATAGTTCATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTGTATCTGGGGGGGTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATAAAAATGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACCCAAGAGGAAGCAGCAGAAGCCTATGATATTGCTGCCATTAAATTCAGAGGAGGTAATGCTGTTACTAACTTTGATATAACAAGATATGATGTGGACAAAATTATGGCAAGCGAGAACCTTCTCAGCAGTGAACAAGCCAAGCGGAGCAGAGAGAAGGAGGAAGTTAACCAAAATCCTTGCACATATGAACACACCAAAGAAACAACCATTGTAATGCAGAAAAGCTGCAAGATGGTTCCCTATCCACCCCAACAGCTTCAACAGAATCCACCAAGAGTTGAGAATTGCAGAACTCATTCCTTCTCAACGGCTTTAGATAACGTATTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTGTTCACTAACGTTCCAACAAGTGACGGGGATTCTTGGGAGCTATCGTCCAATCTCAGGCCACCTCTTTCTTTGCCTCAGATGCCAATTTTTGCTTCCTGGACCGATGCGTAA 1800 0.4372 MKPIENGETVDINYQNSWLGFSLFPQMNITVPSHSHQTHPSSAAAETVPPTYYHHTPLHNYGLLQGEHVGMCSPLPIMPLKSSVSFYGIEAVSRSQAQEMATTSAIPLSLDSMLYNQLSCHGSNDPNNQSHVQDNISQQQLPYYSSLRNSHDVILEGSKQQLPCIAEDEVACLKSWFSRDFSACQAQESRMFVPLEDNGSKSGPNTGSVAYGDLRSLNLSVSPTRRSSCVTGSPAITDTKKRGLEMVDQNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYKNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGGNAVTNFDITRYDVDKIMASENLLSSEQAKRSREKEEVNQNPCTYEHTKETTIVMQKSCKMVPYPPQQLQQNPPRVENCRTHSFSTALDNVFHQEVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLFTNVPTSDGDSWELSSNLRPPLSLPQMPIFASWTDA 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02235 599 MobiDBLite consensus disorder prediction 520 546 - -
Viun2g02235 599 FunFam AP2-like ethylene-responsive transcription factor 370 431 - -
Viun2g02235 599 ProSiteProfiles AP2/ERF domain profile. 269 335 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 SUPERFAMILY DNA-binding domain 370 430 IPR016177 GO:0003677
Viun2g02235 599 SMART rav1_2 269 341 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 SMART rav1_2 371 435 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 CDD AP2 268 335 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 PRINTS Ethylene responsive element binding protein signature 411 431 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 Coils Coil 336 356 - -
Viun2g02235 599 Gene3D AP2/ERF domain 371 431 IPR036955 GO:0003700|GO:0006355
Viun2g02235 599 Gene3D AP2/ERF domain 268 337 IPR036955 GO:0003700|GO:0006355
Viun2g02235 599 SUPERFAMILY DNA-binding domain 268 337 IPR016177 GO:0003677
Viun2g02235 599 MobiDBLite consensus disorder prediction 520 552 - -
Viun2g02235 599 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 225 503 - -
Viun2g02235 599 FunFam AP2-like ethylene-responsive transcription factor ANT 268 337 - -
Viun2g02235 599 CDD AP2 370 431 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 Pfam AP2 domain 269 327 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 Pfam AP2 domain 372 421 IPR001471 GO:0003700|GO:0006355
Viun2g02235 599 ProSiteProfiles AP2/ERF domain profile. 371 429 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02235 Viun-Chr2 29985304 29989075 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02235 48 599 AP2-EREBP Transcription Factor Family AT4G37750 44.026 1.25e-143 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun2g02235 AP2 5.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02235 K09285 - gmx:100812275 904.049