Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02234 ATGAAGCCTATAGAAAATGGCGAAACCGTTGACATAAACTATCAAAATAGCTGGTTAGGTTTCTCCCTCTTCCCGCAAATGAATATAACTGTTCCTTCACACTCTCATCAAACACACCCTTCATCTGCTGCTGCTGAAACCGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGACTACTCCAAGGTGAACATGTTGGAATGTGTTCTCCCTTGCCTATCATGCCCCTTAAATCCAGTGTCTCGTTCTATGGAATAGAAGCTGTGAGCAGATCACAAGCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGCTTTACAACCAACTCTCATGCCATGGATCGAACGACCCAAATAACCAAAGCCATGTACAAGACAACATCAGCCAGCAACAGCTGCCATATTATTCTTCCTTAAGAAACAGCCATGATGTGATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGCTGGTTCTCAAGGGACTTTTCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATACTGGATCAGTAGCATATGGGGATTTACGTTCGTTGAATTTGTCTGTGAGCCCTACCAGACGATCAAGCTGTGTTACAGGTTCGCCTGCTATCACTGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGCAAATAGTTCATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTGTATCTGGGGGGGTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATAAAAATGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGCAGGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACCCAAGAGGAAGCAGCAGAAGCCTATGATATTGCTGCCATTAAATTCAGAGGAGGTAATGCTGTTACTAACTTTGATATAACAAGATATGATGTGGACAAAATTATGGCAAGCGAGAACCTTCTCAGCAGTGAACAAGCCAAGCGGAGCAGAGAGAAGGAGGAAGTTAACCAAAATCCTTGCACATATGAACACACCAAAGAAACAACCATTGTAATGCAGAAAAGCTGCAAGATGGTTCCCTATCCACCCCAACAGCTTCAACAGAATCCACCAAGAGTTGAGAATTGCAGAACTCATTCCTTCTCAACGGCTTTAGATAACGTATTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTGTTCACTAACGTTCCAACAAGTGACGGGGATTCTTGGGAGCTATCGTCCAATCTCAGGCCACCTCTTTCTTTGCCTCAGATGCCAATTTTTGCTTCCTGGACCGATGCGTAA 1803 0.4376 MKPIENGETVDINYQNSWLGFSLFPQMNITVPSHSHQTHPSSAAAETVPPTYYHHTPLHNYGLLQGEHVGMCSPLPIMPLKSSVSFYGIEAVSRSQAQEMATTSAIPLSLDSMLYNQLSCHGSNDPNNQSHVQDNISQQQLPYYSSLRNSHDVILEGSKQQLPCIAEDEVACLKSWFSRDFSACQAQESRMFVPLEDNGSKSGPNTGSVAYGDLRSLNLSVSPTRRSSCVTGSPAITDTKKRGLEMVDQNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYKNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTSRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGGNAVTNFDITRYDVDKIMASENLLSSEQAKRSREKEEVNQNPCTYEHTKETTIVMQKSCKMVPYPPQQLQQNPPRVENCRTHSFSTALDNVFHQEVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLFTNVPTSDGDSWELSSNLRPPLSLPQMPIFASWTDA 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02234 600 Gene3D AP2/ERF domain 371 432 IPR036955 GO:0003700|GO:0006355
Viun2g02234 600 Gene3D AP2/ERF domain 268 337 IPR036955 GO:0003700|GO:0006355
Viun2g02234 600 ProSiteProfiles AP2/ERF domain profile. 269 335 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 FunFam AP2-like ethylene-responsive transcription factor 370 432 - -
Viun2g02234 600 MobiDBLite consensus disorder prediction 521 553 - -
Viun2g02234 600 CDD AP2 370 432 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 CDD AP2 268 335 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 Coils Coil 336 356 - -
Viun2g02234 600 ProSiteProfiles AP2/ERF domain profile. 371 430 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 Pfam AP2 domain 269 327 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 Pfam AP2 domain 372 422 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 SUPERFAMILY DNA-binding domain 268 337 IPR016177 GO:0003677
Viun2g02234 600 FunFam AP2-like ethylene-responsive transcription factor ANT 268 337 - -
Viun2g02234 600 SUPERFAMILY DNA-binding domain 370 431 IPR016177 GO:0003677
Viun2g02234 600 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 233 502 - -
Viun2g02234 600 SMART rav1_2 371 436 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 SMART rav1_2 269 341 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 MobiDBLite consensus disorder prediction 521 547 - -
Viun2g02234 600 PRINTS Ethylene responsive element binding protein signature 412 432 IPR001471 GO:0003700|GO:0006355
Viun2g02234 600 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02234 Viun-Chr2 29985303 29989075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02234 48 600 AP2-EREBP Transcription Factor Family AT4G37750 43.954 8.45e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Viun2g02234 AP2 5.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02234 K09285 - gmx:100812275 910.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02234 2 29985303 29989075 Viun3g03978 3 47202630 47206941 PCT