Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02233 ATGAAGCCTATAGAAAATGGCGAAACCGTTGACATAAACTATCAAAATAGCTGGTTAGGTTTCTCCCTCTTCCCGCAAATGAATATAACTGTTCCTTCACACTCTCATCAAACACACCCTTCATCTGCTGCTGCTGAAACCGTTCCACCAACGTATTACCACCACACACCTCTTCATAACTATGGACTACTCCAAGGTGAACATGTTGGAATGTGTTCTCCCTTGCCTATCATGCCCCTTAAATCCAGTGTCTCGTTCTATGGAATAGAAGCTGTGAGCAGATCACAAGCACAAGAAATGGCAACTACTTCGGCAATACCTCTGAGCTTGGATAGTATGCTTTACAACCAACTCTCATGCCATGGATCGAACGACCCAAATAACCAAAGCCATGTACAAGACAACATCAGCCAGCAACAGCTGCCATATTATTCTTCCTTAAGAAACAGCCATGATGTGATTTTAGAAGGGTCTAAGCAGCAACTCCCTTGTATAGCTGAGGATGAAGTTGCTTGTCTGAAAAGCTGGTTCTCAAGGGACTTTTCTGCTTGTCAAGCGCAGGAGTCAAGGATGTTTGTTCCTTTGGAGGATAATGGAAGCAAATCTGGACCCAATACTGGATCAGTAGCATATGGGGATTTACGTTCGTTGAATTTGTCTGTGAGCCCTACCAGACGATCAAGCTGTGTTACAGGTTCGCCTGCTATCACTGATACGAAGAAAAGGGGGCTTGAAATGGTGGACCAGAATCAGAAGCAAATAGTTCATAGGAAATCCATAGACACCTTTGGGCAAAGAACATCTCAATATAGAGGTGTAACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAACAGCTGCAAGAAAGAGGGCCAAGGAAGGAAAGGAAGGCAAGTGTATCTGGGGGGGTATGATATGGAAGAAAAAGCTGCAAGAGCTTACGACATGGCCGCACTCAAGTATTGGGGACCCTCCTCTCATATAAATTTCCCTTTGGAAAATTATAAAAATGAACTTGAGGAAATGAAAAACATGACGAGACAAGAATATGTTGCTCATTTACGAAGGAAAAGCAGCGGATTCTCAAGAGGAGCATCCATGTATAGAGGAGTAACAAGGTCTCACAGGCTAGCATTTACATTGCACCACCAACATGGAAGGTGGCAAGCTCGAATTGGGAGAGTGGCTGGAAACAAAGATCTATATCTTGGAACCTTCAGCACCCAAGAGGAAGCAGCAGAAGCCTATGATATTGCTGCCATTAAATTCAGAGGAGGTAATGCTGTTACTAACTTTGATATAACAAGATATGATGTGGACAAAATTATGGCAAGCGAGAACCTTCTCAGCAGTGAACAAGCCAAGCGGAGCAGAGAGAAGGAGGAAGTTAACCAAAATCCTTGCACATATGAACACACCAAAGAAACAACCATTGTAATGCAGAAAAGCTGCAAGATGGTTCCCTATCCACCCCAACAGCTTCAACAGAATCCACCAAGAGTTGAGAATTGCAGAACTCATTCCTTCTCAACGGCTTTAGATAACGTATTTCATCAAGAAGTAGAGGAATCGAGTAACATGGGAACACACTTGTCAAATCCTTCTTCTCTGGTGACAAGTTTGAGTAGCTCAAGAGAAGAGAGCCCAGATAAGACAAGCTTGCCAATGCTCTTTGGAATGCCTTCAACAGTGTCTAAATTGTTCACTAACGTTCCAACAAGTGACGGGGATTCTTGGGAGCTATCGTCCAATCTCAGGCCACCTCTTTCTTTGCCTCAGATGCCAATTTTTGCTTCCTGGACCGATGCGTAA 1824 0.437 MKPIENGETVDINYQNSWLGFSLFPQMNITVPSHSHQTHPSSAAAETVPPTYYHHTPLHNYGLLQGEHVGMCSPLPIMPLKSSVSFYGIEAVSRSQAQEMATTSAIPLSLDSMLYNQLSCHGSNDPNNQSHVQDNISQQQLPYYSSLRNSHDVILEGSKQQLPCIAEDEVACLKSWFSRDFSACQAQESRMFVPLEDNGSKSGPNTGSVAYGDLRSLNLSVSPTRRSSCVTGSPAITDTKKRGLEMVDQNQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQGRKGRQVYLGGYDMEEKAARAYDMAALKYWGPSSHINFPLENYKNELEEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRSHRLAFTLHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGGNAVTNFDITRYDVDKIMASENLLSSEQAKRSREKEEVNQNPCTYEHTKETTIVMQKSCKMVPYPPQQLQQNPPRVENCRTHSFSTALDNVFHQEVEESSNMGTHLSNPSSLVTSLSSSREESPDKTSLPMLFGMPSTVSKLFTNVPTSDGDSWELSSNLRPPLSLPQMPIFASWTDA 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02233 607 ProSiteProfiles AP2/ERF domain profile. 371 437 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 FunFam AP2-like ethylene-responsive transcription factor ANT 268 337 - -
Viun2g02233 607 CDD AP2 370 439 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 Gene3D AP2/ERF domain 268 337 IPR036955 GO:0003700|GO:0006355
Viun2g02233 607 Gene3D AP2/ERF domain 371 439 IPR036955 GO:0003700|GO:0006355
Viun2g02233 607 ProSiteProfiles AP2/ERF domain profile. 269 335 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 MobiDBLite consensus disorder prediction 528 554 - -
Viun2g02233 607 SUPERFAMILY DNA-binding domain 386 438 IPR016177 GO:0003677
Viun2g02233 607 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 226 504 - -
Viun2g02233 607 CDD AP2 268 335 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 Coils Coil 336 356 - -
Viun2g02233 607 MobiDBLite consensus disorder prediction 528 560 - -
Viun2g02233 607 SUPERFAMILY DNA-binding domain 268 337 IPR016177 GO:0003677
Viun2g02233 607 SMART rav1_2 269 341 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 SMART rav1_2 371 443 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 Pfam AP2 domain 388 429 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 Pfam AP2 domain 269 327 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 PRINTS Ethylene responsive element binding protein signature 317 337 IPR001471 GO:0003700|GO:0006355
Viun2g02233 607 PRINTS Ethylene responsive element binding protein signature 270 281 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02233 Viun-Chr2 29985303 29989075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02233 48 607 AP2-EREBP Transcription Factor Family AT4G37750 43.457 1.48e-140 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Viun2g02233 AP2 4.5e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02233 K09285 - gmx:100794433 920.613