Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Viun2g02213 | ATGGGTGCTCCTAAGCAAAAGTGGACCGCAGAGGAAGAAGCGGCATTGAAAGCTGGAGTTGTCAAACACGGGGCTGGAAAATGGCGCACCATACTTACCGACCCAGAGTTCAGTTCCATTCTGCGCATGCGTTCTAATGTTGATCTCAAGGACAAATGGAGGAACATAAATGTGACAGCAATATGGGGATCAAGGCAGAAGGCAAAGCTTGCTCTTACAAAGAACCTACTACCATCCCCCAAAATTGACAATAATCACATGGCCTTGAGTACTGCAGTTCAACGTGACAGAGGAGCAGCAGATCCCAAGCCTCTGGCAGTTTCTGGTGGAATATCTCCTAATTCAAAGGAAAAAGTATCAAGGCTACAGAACTTCCAGTTGGATAATATTATATTAGAGTCTATTATCAAGTTGAAGGAGCCAAAGGGTTCTGACAGGGCAGCAATTGCTTCATATATAGAGGATCAATACTGCTCTACACCAACCCTCAGAAAGTTACTGTCAACAAAACTGAAGCACATGGTGGCGAGTGGAAAATTAATGAAGGTAAAGCATAAGTACAGGATTGCAACAAATTTAACTATATCTGAGAAAAGAAGATGTTCTTCCTTGTTACTCCTGGAAGGGAGGCCCAAAGATTCTCCAAAAACTGAGAAGACTGGTGTCAACATTCTTTCAAAATCTGAAATTGATGCAGAGCTATCAAAAATGAAGGGTGTGACACCACAAGAAGCAGCAGCTGCTGCTGCAAAAGCAGTTGCTGAGGCGGAAGCCGCCATTGCGGAGGCTGAGGCAGCAGCTAGGGAGGCAGACGCTGCAGAAGCCGAGGCAGAGGCTGCACGAGTGTTTGCAAAAGCAGCAATAAAGGCTCTAAAATGCAAGACGCTTCACGTTTGA | 897 | 0.4526 | MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSSILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALTKNLLPSPKIDNNHMALSTAVQRDRGAADPKPLAVSGGISPNSKEKVSRLQNFQLDNIILESIIKLKEPKGSDRAAIASYIEDQYCSTPTLRKLLSTKLKHMVASGKLMKVKHKYRIATNLTISEKRRCSSLLLLEGRPKDSPKTEKTGVNILSKSEIDAELSKMKGVTPQEAAAAAAKAVAEAEAAIAEAEAAAREADAAEAEAEAARVFAKAAIKALKCKTLHV | 298 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Viun2g02213 | 298 | SUPERFAMILY | Homeodomain-like | 2 | 66 | IPR009057 | - | |
Viun2g02213 | 298 | Gene3D | - | 2 | 59 | - | - | |
Viun2g02213 | 298 | ProSiteProfiles | Myb-like domain profile. | 5 | 57 | IPR001005 | - | |
Viun2g02213 | 298 | CDD | SANT_TRF | 6 | 57 | - | - | |
Viun2g02213 | 298 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 61 | IPR017930 | - | |
Viun2g02213 | 298 | Coils | Coil | 246 | 280 | - | - | |
Viun2g02213 | 298 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 294 | IPR044597 | GO:0003691 | |
Viun2g02213 | 298 | SUPERFAMILY | "Winged helix" DNA-binding domain | 124 | 200 | IPR036390 | - | |
Viun2g02213 | 298 | Gene3D | - | 123 | 221 | IPR036388 | - | |
Viun2g02213 | 298 | SMART | h15plus2 | 121 | 186 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Viun2g02213 | 298 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 115 | 191 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Viun2g02213 | 298 | FunFam | Telomere repeat-binding factor 1 | 2 | 58 | - | - | |
Viun2g02213 | 298 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
Viun2g02213 | 298 | Pfam | linker histone H1 and H5 family | 128 | 185 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Viun2g02213 | 298 | SMART | sant | 4 | 59 | IPR001005 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Viun2g02213 | Viun-Chr2 | 29891908 | 29897124 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Viun2g02213 | 1 | 294 | Single Myb Histone (SMH) Gene Family | AT5G67580 | 54.730 | 6.56e-76 | 232 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Viun2g02213 | Linker_histone | 9e-11 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Viun2g02213 | K09422 | - | gmx:778165 | 474.552 |