Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02192 ATGAGTTGCAACGGTTGCCGCGTCCTTCGAAAGGGTTGCAGCGAGTCTTGTATCCTGCGGCCGTGTCTACAGTGGATCGATACTCCCGAGGCCCAAGGTCATGCCACTGTCTTTGTTGCCAAATTCTTCGGCCGTGCAGACCTCATGTCCTTCATTTCCAACGTCCCTGAGGCCCAAAGGCCCGCTCTGTTTCAGTCTCTGCTGTTTGAAGCTTGCGGACGAACGGTGAATCCCGTCAACGGTGCTGTTGGCCTTTTGTGGACGGGAAACTGGCACGTGTGTCAGGCGGCGGTTGAGACGGTGCTCCGTGGCGGTACCGTCAGGCCGGTGCCGGAGCTTCTTGGCCTTGACGCTCCCACTCCCGACGACGCCTCCGAAGGCGAAGTTACCTGTAACGACAAATGGAGGGTCCAAGATCCGAACCCTAGTTTCCGGTTGCCCGGTGCGATGTCTGATAAGGCTGCTTCCGGTGGTAAACGCAAGCGGTTGGAGGAGCTTTCAAAGCTGCAGACGGCTACCACTGATCTCAATCTCCGGTTGAAACCGAGTTTCCTGCAGAACGCGGCGAGCTTCGGTTGCCGACAGGAAATTCGATGGCCGAGATCGCCGTCGATCAACTCGGAGGAGTCCGGGACCACTACGGCGGCGTGCTTGGAAAGCGGGATCGGAGATCTCTACGCTCCCGATGGAGGCCGGAAAGTGTTAAACCTCTTCATTTGA 720 0.5778 MSCNGCRVLRKGCSESCILRPCLQWIDTPEAQGHATVFVAKFFGRADLMSFISNVPEAQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTVRPVPELLGLDAPTPDDASEGEVTCNDKWRVQDPNPSFRLPGAMSDKAASGGKRKRLEELSKLQTATTDLNLRLKPSFLQNAASFGCRQEIRWPRSPSINSEESGTTTAACLESGIGDLYAPDGGRKVLNLFI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02192 239 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Viun2g02192 239 MobiDBLite consensus disorder prediction 142 161 - -
Viun2g02192 239 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Viun2g02192 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02192 Viun-Chr2 29741985 29743613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02192 1 239 AS2 family AT5G67420 54.440 2.87e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Viun2g02192 LOB 3.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02192 2 29741985 29743613 Viun3g03921 3 46709487 46710843 ECH
Viun2g02192 2 29741985 29743613 Viun2g02192 2 29741985 29743613 ECH
Viun3g03921 3 46709487 46710843 Viun2g02192 2 29741985 29743613 PCT