Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02185 ATGGCTAGAAAGAAGTTGGATTTGACATACATCATCAATGACTCAAAGAGGAAGACAACCTTAAAGAAAAGAAAACATGGTTTGATCAAGAAAATGAATGAAATTACCACCCTTTGTGGGATTGAAGCATGTGCTATAATCTATTCTCCAAATGATCCTCAACCAGAGGTTTGGCCATCTGAGCCAGAAGTTCAAAGGGTGCTTTCCAAGTTCATGGAAATGTCTGAGCAGAAACAATGTAGAAAGATGTTGAATCAAGAGAGCTTGTTGAAACAAATAATCATCAAAGGCCAACAACAGTTAACAAAACAAAGGAATGAGAATAGGAAGAAAGAAATGACTCATCTTATGTTTCAATATTTGAGGGTTGGGAGGGTTTTTAACAATCCTAGTTTGATAGATTTGAATGATCTCTCATGGTTGATTGATCAAAACTTGAATGAAATAAAAAAGAAGATAACTATGATCCAAATCCAAGAAGGTGCACCAGTGACTAAAAATGGAGAAGAACATGGATACATGCATCATGTTCAAGGGCTAGAGAACAATATAGACACCATTCAGAACCAACATTGA 576 0.3576 MARKKLDLTYIINDSKRKTTLKKRKHGLIKKMNEITTLCGIEACAIIYSPNDPQPEVWPSEPEVQRVLSKFMEMSEQKQCRKMLNQESLLKQIIIKGQQQLTKQRNENRKKEMTHLMFQYLRVGRVFNNPSLIDLNDLSWLIDQNLNEIKKKITMIQIQEGAPVTKNGEEHGYMHHVQGLENNIDTIQNQH 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02185 191 PANTHER MADS BOX PROTEIN 3 154 - -
Viun2g02185 191 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Viun2g02185 191 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Viun2g02185 191 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Viun2g02185 191 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Viun2g02185 191 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Viun2g02185 191 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Viun2g02185 191 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Viun2g02185 191 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Viun2g02185 191 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Viun2g02185 191 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02185 Viun-Chr2 29708163 29709399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02185 1 170 Type I MADS-box Gene Family AT5G48670 47.429 2.65e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Viun2g02185 SRF-TF 1.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02185 - - gmx:100797590 304.679