Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02168 ATGTTGGAGCGATGTCTGAGGCCACTGGAGATGTGCTTTGGTGGTGGAGGCAGCGACCAAACCCTTCTCTGGGACACTGACCTTAAGCCACACGCTTCAGGGAACTACTCAATTGCAGTAGTACAAGCTAATTCCTCCTTGGAAGATCAAGCACAAGTCTTCACCTCTTCCTCCGCAACCTTTGTCGGCGTATACGACGGCCACGGTGGACCCCAAGCTTCCCGTTTCATCACCAATCATCTCTTCTCCTTCCTCCGCAAGTTCACAGCAGAGGAAGGTGGGTTGTCGGAGGAGGTGATAAAGAAGGCGTTCGCGGTAACAGAGGAAGAGTTTTTGCGTTTTGTGAAACAATCATGGATTTCGCGACCACAAATGGCTTCGGTGGGTTCGTGCTGTCTTCTGGGAGCGATTTCAAAAGACGTTCTTTATGTTGCTAATCTAGGGGATTCAAGGGCGGTTCTGGGCCGGAGAGCGTCGGAAGGAGAGGCGAATTGCGGCGGTGTGGTGGCGGAGCGTTTGTCTACTGATCATAACGTTGGAGTGGAGGAGGTGAGAAAGGAGGTGGAGGCTCTTCACCCTGATGACGCACACATTGTGGTTTGCACTCGTGGAGTTTGGCGAATCAAGGGCATTATTCAGGTATCAAGATCAATCGGAGATGCGTACTTGAAGAAACCAAATTTTGACGATAACCCTTTGTTCCAACAATTTGCATGTCCACTATACTTGAAGAGACCTGTGATGACAGCGGAACCATCGATACTGATGCGGAAATTGAAGGCAAATGATCTGTTTTTAGTCTTTGCATCAGATGGACTTTGGGAGCATTTAACTGATGAAGAGGTTGTTCAAATTGTCTCCACAAATCCCAGAACAGGAATAGCGAAACGAGTGGTGACAGTTGCACTGGAAGAGGCAGCAAAGAAGAGAGATATGAGGTATGATGAGTTAAAGAAAGTTGAGAAAGGTCTAAGGCGTCATTTTCATGATGATATTACAGTGATCGTTCTATATCTGGATCATTCGAAAGAATCTATAAATGGTAGGTCAAGACATAAAGGAGATTATGGCTGCATTAATACTCCCATTGATATCTTCTCTCAAAGTGCAAATGATTTTGATCTTTAA 1128 0.4628 MLERCLRPLEMCFGGGGSDQTLLWDTDLKPHASGNYSIAVVQANSSLEDQAQVFTSSSATFVGVYDGHGGPQASRFITNHLFSFLRKFTAEEGGLSEEVIKKAFAVTEEEFLRFVKQSWISRPQMASVGSCCLLGAISKDVLYVANLGDSRAVLGRRASEGEANCGGVVAERLSTDHNVGVEEVRKEVEALHPDDAHIVVCTRGVWRIKGIIQVSRSIGDAYLKKPNFDDNPLFQQFACPLYLKRPVMTAEPSILMRKLKANDLFLVFASDGLWEHLTDEEVVQIVSTNPRTGIAKRVVTVALEEAAKKRDMRYDELKKVEKGLRRHFHDDITVIVLYLDHSKESINGRSRHKGDYGCINTPIDIFSQSANDFDL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02168 375 CDD PP2Cc 42 339 IPR001932 -
Viun2g02168 375 ProSitePatterns PPM-type phosphatase domain signature. 61 69 IPR000222 GO:0043169
Viun2g02168 375 Pfam Protein phosphatase 2C 56 308 IPR001932 -
Viun2g02168 375 ProSiteProfiles PPM-type phosphatase domain profile. 35 339 IPR001932 -
Viun2g02168 375 PANTHER PROTEIN PHOSPHATASE 36 337 IPR015655 GO:0004722|GO:0006470
Viun2g02168 375 FunFam Probable protein phosphatase 2C 42 26 347 - -
Viun2g02168 375 SUPERFAMILY PP2C-like 40 341 IPR036457 -
Viun2g02168 375 SMART PP2C_4 28 337 IPR001932 -
Viun2g02168 375 Gene3D - 25 348 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02168 Viun-Chr2 29639949 29642120 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02168 17 345 PP2C-type Phosphatase Gene Family AT3G51370 51.632 4.30e-131 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02168 - K01102 gmx:100802394 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02168 2 29639949 29642120 Viun2g02168 2 29639949 29642120 ECH
Viun2g02168 2 29639949 29642120 Viun7g03616 7 37271529 37274390 PCT