Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02145 ATGGAACCAGCTCCTGCTTATTCTTCATCTCAACCTACTCCTCCAGTTTCTAGTGCTGAAGAACAACACCAACCCAAAGTGACAGGACAGATCAACAATGCACATGATTCACCATCATCAACGTTACCTGCTTCTGGCATGTCATTATGGACAAGACATCTGAAAATTCCAGGCCTTGGCCTTGGACAAGCACAACAGGATTCACAGACCGAAAACACAAGCGTATCAGCTTTTGCTCGCCTGACTGGTGGGCTTGGATTGCTAACGCAGTCGAAAGAATCTGCTGGTCCAGTCAATTCAGGACCTGATCAATCTAATTTAATTGAATCCTTCGCCAAAGGGTTGATGGACTCTTCCAAGAGTGCAGTAAAAGCTGTCCAGGTCAAAGCACGCCATATTGTCTCTCAGAATAAACGTAGATACCAGGAAGATGGATTTGATTTGGATATGACATACATCACTGAAAATATAATTGCTATGGGATTTCCGGGTGGTGATATTAGCTCTGGAATTGTTGGATACATTGAGGGGTTCTATCGCAATCACATGGAAGAGGTGATCAAGTTTTTTGAAACACATCATAAGGGTAAATACAAAGTATACAATCTTTGTTCAGAAAGGTTATATGATGGATCATTATTCCAGGGGAAGGTTGCGACTTTCCCATTTAGTGATCATAATTGCCCCCCTATTCAACTTATAACATCATTCTGTCAAAGTGCATATTCATGGTTGAAGGAGGATATTCAAAATGTGGTGGTTGTTCATTGTAAAGCTGGTATGGGGAGGACTGGACTGATGATATGTTGTCTTCTTTTGTCTCTTAAGTTCTTCCCAACTGCAGAGGAAGCCATTGATTACTTTAACCATAAAAGATGTGTAGATGGAAAGGCTCTAGTCCTCCCTAGTCAAATAAGATATGTAAAATACTTTGAACGGACTTTAACACAATTCAATGGAGAAGTCCAGCCTGGACGAAGGTGCATACTAAGAGGGTTCCGGCTTCAAAGGTGCCCTTATTGGGTTAGACCATCTATTACAATTTCTGATCATAAGGGAGTTTTGTTTGCCACAAGAAACCATCCCAAAACCAAAGATCTATTGCCAGAAGATTTCTGGATCAGTGCACCGAAGAAAGGAATTGTGGTTTTTGCTCTACCAGGAGAACCTGGTCTAGCAGAGTTGGAAGGAGACTTCAAAATTCATTTTAATGATAGACAAGGAGATTTCTACTGTTGGATGAATACAACAATGATAGAAAATCGAAAAGTTTTAGATGGTTCAGATTTTGATGGTTTCGACAAGAGGAAGATCCCCACTCCAGGATTCCGGGTGGAAGTTGTCATGATAGACTATAATGAAACCCTACCTTCAATTACAAAAGCAAATCCCACCAGCAAAGGATCTGATGGAAACACAATCAATGCCGTACCTGGTCCAAAGCCTTCTACATCTAATTCAACTGAGAGTAAACCCCCAAGAAATGAAGATGATGTATTCTCAGACAGTGATGAAGAGGAGAGTCGAGATACACAAAGCAAGAAAGCTGCAACTGAGTACAAATTTATGGCACCTCATCAAGCATCTGAGGGGACAACAGATCATGTAGGGATGTTGACAAACTCAACGGATCGTTTGTCACTGCAGCATGAGGCTGGCATGCAGAATAATTCTTCTGAAAAATCAACTGCAGATGAACATCATAAAGTTCACAGCACAAACGTGGAATCTGTAGGGGCAAGTGACATCAAGGCAATTGCAGCAGATGCTTCAGTTTTTTCCTTTGGGGATGAAGACTTTGAAAGTGATTGA 1812 0.4128 MEPAPAYSSSQPTPPVSSAEEQHQPKVTGQINNAHDSPSSTLPASGMSLWTRHLKIPGLGLGQAQQDSQTENTSVSAFARLTGGLGLLTQSKESAGPVNSGPDQSNLIESFAKGLMDSSKSAVKAVQVKARHIVSQNKRRYQEDGFDLDMTYITENIIAMGFPGGDISSGIVGYIEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDGSLFQGKVATFPFSDHNCPPIQLITSFCQSAYSWLKEDIQNVVVVHCKAGMGRTGLMICCLLLSLKFFPTAEEAIDYFNHKRCVDGKALVLPSQIRYVKYFERTLTQFNGEVQPGRRCILRGFRLQRCPYWVRPSITISDHKGVLFATRNHPKTKDLLPEDFWISAPKKGIVVFALPGEPGLAELEGDFKIHFNDRQGDFYCWMNTTMIENRKVLDGSDFDGFDKRKIPTPGFRVEVVMIDYNETLPSITKANPTSKGSDGNTINAVPGPKPSTSNSTESKPPRNEDDVFSDSDEEESRDTQSKKAATEYKFMAPHQASEGTTDHVGMLTNSTDRLSLQHEAGMQNNSSEKSTADEHHKVHSTNVESVGASDIKAIAADASVFSFGDEDFESD 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02145 603 SMART PTEN_C2_2 323 451 IPR014020 -
Viun2g02145 603 MobiDBLite consensus disorder prediction 458 490 - -
Viun2g02145 603 ProSitePatterns Tyrosine specific protein phosphatases active site. 255 265 IPR016130 GO:0016311|GO:0016791
Viun2g02145 603 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 253 292 IPR000387 GO:0016311|GO:0016791
Viun2g02145 603 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 124 321 - -
Viun2g02145 603 MobiDBLite consensus disorder prediction 458 515 - -
Viun2g02145 603 MobiDBLite consensus disorder prediction 11 45 - -
Viun2g02145 603 ProSiteProfiles Phosphatase tensin-type domain profile. 139 318 IPR029023 -
Viun2g02145 603 ProSiteProfiles C2 tensin-type domain profile. 325 452 IPR014020 -
Viun2g02145 603 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 117 568 - -
Viun2g02145 603 MobiDBLite consensus disorder prediction 553 576 - -
Viun2g02145 603 CDD PTP_PTEN 149 313 IPR045101 GO:0016791
Viun2g02145 603 MobiDBLite consensus disorder prediction 1 45 - -
Viun2g02145 603 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 152 317 IPR029021 -
Viun2g02145 603 Gene3D Protein tyrosine phosphatase superfamily 124 321 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02145 Viun-Chr2 29473196 29480849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02145 36 603 Protein tyrosine phosphatase (PTP) family AT3G19420 60.570 0.0 723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02145 K01110 - gmx:100801622 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02145 2 29473196 29480849 Viun2g02145 2 29473196 29480849 ECH
Viun2g02145 2 29473196 29480849 Viun7g03670 7 37608608 37616202 PCT