Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02140 ATGCCTGTGGAGCTGATGATGGGTTATAGGAACGACACTTTCGCGGAAGAGGATGCGGTTCGTGAAGCCGCGTCAGGGCTAGAGAGCGTGGAGAAGCTCATCAGGTTGCTGTCACACGCTCAGCTCCAACAACTTCAACAACAATCGCACGCGACCAATTCAAAGTCTTCCATGGAAATTGAATCCGATTACGGAGCTGTCGCTGACGTGGCGGTTTCCAAGTTCAAGAAGGTCATTTCGCTTCTCGGCCGAACAAGAACCGGTCACGCGCGTTTCAGAAGAGCCCCTGTGCCTCCTCCTCCTCCTCCTCCTCCACCTCCTTCCGAACCCAGATTCTACCGTGCAACGCCGCTGCAGCAGATCCCGCCCCCCACCGAACACCCTTTCATCCCCAAAAATGGACCGATTGAGACAAAGGACTCTTCCAAGACCATCAACTTCTCTTATTCTAATTCCTTCGTCTCCTCCCTCACCGGCGACACCGACACTAAACAGCCCTCTTCCTCGTCGCCTGCGGCCGCTACGCCTTTTCAGATCACGAATCTCTCTCAGGTCTCCTCCGCGGGAAAGCCTCCTATTTCTACCTCTTCCTTGAAGAGGAAGTGCAGCTCTGATAATTTGGGTTCTGCCAAGTGCGGCAGTTCCTCTAGCCGATGCCATTGCTCAAAGAAGAGCAGAAAAATGAGGTTGAAGAGGGTGGTGAGGGTACCCGCAATAAGTTTGAAGATGGCTGATATTCCGCCAGATGATTATTCTTGGAGGAAATACGGACAGAAACCCATTAAAGGATCTCCTCATCCAAGGGGCTATTACAAGTGCAGCAGTGTTAGAGGGTGTCCAGCGCGGAAGCATGTAGAGAGGGCTCTGGATGACCCTTCTATGTTGGTAGTGACCTATGAAGGTGAACACAATCACACACTCTCTGCAGTCGAAGCTACCACTAATCTTATCCTAGAATCTTCTTAG 966 0.5176 MPVELMMGYRNDTFAEEDAVREAASGLESVEKLIRLLSHAQLQQLQQQSHATNSKSSMEIESDYGAVADVAVSKFKKVISLLGRTRTGHARFRRAPVPPPPPPPPPPSEPRFYRATPLQQIPPPTEHPFIPKNGPIETKDSSKTINFSYSNSFVSSLTGDTDTKQPSSSSPAAATPFQITNLSQVSSAGKPPISTSSLKRKCSSDNLGSAKCGSSSSRCHCSKKSRKMRLKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERALDDPSMLVVTYEGEHNHTLSAVEATTNLILESS 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02140 321 Gene3D WRKY domain 235 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun2g02140 321 MobiDBLite consensus disorder prediction 94 112 - -
Viun2g02140 321 MobiDBLite consensus disorder prediction 181 219 - -
Viun2g02140 321 FunFam WRKY transcription factor 65 231 308 - -
Viun2g02140 321 MobiDBLite consensus disorder prediction 181 220 - -
Viun2g02140 321 SUPERFAMILY WRKY DNA-binding domain 244 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Viun2g02140 321 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 313 IPR044810 GO:0003700
Viun2g02140 321 MobiDBLite consensus disorder prediction 87 115 - -
Viun2g02140 321 ProSiteProfiles WRKY domain profile. 242 308 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun2g02140 321 Pfam Plant zinc cluster domain 199 245 IPR018872 -
Viun2g02140 321 SMART WRKY_cls 247 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Viun2g02140 321 Pfam WRKY DNA -binding domain 249 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02140 Viun-Chr2 29440163 29442329 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02140 1 311 WRKY Transcription Factor Family AT2G24570 45.428 9.50e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Viun2g02140 WRKY 3.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02140 - - gmx:100804089 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02140 2 29440163 29442329 Viun2g02140 2 29440163 29442329 ECH
Viun2g02140 2 29440163 29442329 Viun3g05320 3 59603032 59604578 PCT