Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02132 ATGGACGACATGGCTGCCTACTACTCACAGCCCCAACCGGCGGGCCTTCTCACTTACCACCAGTACTATCAACCGCCGCCTCCGCAACCTCCTCCGCTGTTGGCGGTGGTACCACCGCCTCCCGGAGCGGTTGTCCCGCCGGCGCACCACGGGCATCCGCCGTACGTGGCTCAGCATCAACAGCAAGCGGTGTTCGGTTCTTACGGCGCTCCTCAACCCTCCACGAACGAGGTTCGCACCCTCTTCGTCGCTGGCCTCCCAGAAGATGTCAAGCCCCGCGAAATCTACAATCTTTTCCACGAATTTCCCGGTTACGAGTCTTCACATCTCCGGAGTCCCACCAATTCGTCTCAGCCTTTTGCTTTTGCTGTGTTCGCCAGTCAGCAGTCAGCAATCATGGCAATGCATGCTCTGAATGGGATGGTGTTTGATCTTGAAAAGGGCTCCACTCTATTTATTGATCTTGCAAAATCAAACTCTAGATCCAAACGCACTAGGATAGATGATGAGAGAACCGGTGCCGATAAGAAAGCTAGAAGTCTTACATCATCATGGATCACTCCCGATTCTGCAGGTGTTAGCAGCATTCACATGCCTGGAATGGGTAATCCTGCTTTCAACACGAACACGTTTGGTTATCCACCTGCACAAAGTCTTGGTAGTGCTGATGGGAGTGCTGTGAATGATGGTCGATACCTGAATATGAAGTCTTCAGCTCCTTACATTCCTCAAAACTCAACCCCGTGTGCAACTTTATTTGTAGCAAATCTGGGGCCATCTTGTAATGAACAAGAGCTAATGCAAGTGTTTTCTAGATTCCATGGATTTTTGAAACTGAAGATGCAGAGCACATACGGGGCGCCAGTAGCATTTGTTGATTTCCAGGATGCCAATAGCTCAACTGAAGCTCTAAACAGTTTGCAAGGCACAATTCTTCACTCTTCGCAAACTGGCGAGGGAATGCGTTTAGAATATGCAAAATCGCGGATGGGCATGCGAAAGAAGCCAAAGTAA 1014 0.5 MDDMAAYYSQPQPAGLLTYHQYYQPPPPQPPPLLAVVPPPPGAVVPPAHHGHPPYVAQHQQQAVFGSYGAPQPSTNEVRTLFVAGLPEDVKPREIYNLFHEFPGYESSHLRSPTNSSQPFAFAVFASQQSAIMAMHALNGMVFDLEKGSTLFIDLAKSNSRSKRTRIDDERTGADKKARSLTSSWITPDSAGVSSIHMPGMGNPAFNTNTFGYPPAQSLGSADGSAVNDGRYLNMKSSAPYIPQNSTPCATLFVANLGPSCNEQELMQVFSRFHGFLKLKMQSTYGAPVAFVDFQDANSSTEALNSLQGTILHSSQTGEGMRLEYAKSRMGMRKKPK 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02132 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 250 328 IPR000504 GO:0003723
Viun2g02132 337 MobiDBLite consensus disorder prediction 162 181 - -
Viun2g02132 337 MobiDBLite consensus disorder prediction 162 177 - -
Viun2g02132 337 Gene3D - 75 168 IPR012677 -
Viun2g02132 337 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 226 328 - -
Viun2g02132 337 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 158 IPR000504 GO:0003723
Viun2g02132 337 FunFam RNA-binding protein with multiple splicing 2 76 166 - -
Viun2g02132 337 SUPERFAMILY RNA-binding domain, RBD 78 314 IPR035979 GO:0003676
Viun2g02132 337 SMART rrm1_1 251 324 IPR000504 GO:0003723
Viun2g02132 337 SMART rrm1_1 80 154 IPR000504 GO:0003723
Viun2g02132 337 FunFam RNA-binding protein with multiple splicing 242 333 - -
Viun2g02132 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 252 315 IPR000504 GO:0003723
Viun2g02132 337 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 144 IPR000504 GO:0003723
Viun2g02132 337 Gene3D - 242 336 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02132 Viun-Chr2 29408836 29413102 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02132 81 314 Eukaryotic Initiation Factors Gene Family AT4G34110 22.059 1.05e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02132 - - gmx:100780983 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02132 2 29408836 29413102 Viun2g02132 2 29408836 29413102 ECH