Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02130 ATGGAGCCTCAAGGAAGAACAGGAGGAGAGAGAGAGCCCACAAGGAAGCGAAGCGGCGTGGCGGTGGCGGTGGACGGAGAGAGAAGATACAAAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTCGCGGAAATTAGGGAACCCAACAAGCGTTCCAGGATTTGGCTAGGTTCCTATTCCACCCCTGTCGCCGCCGCACGTGCTTACGACACCGCCGTCTTTTACCTCAGGGGACCCTCCGCGCGCCTCAACTTTCCGGACCTTCTTGTCGGAGAGGGCGCCGCCGCCCTTGTAGCCGGTTGCGACATGTCAGCTGCCTCTATCAGGAAGAAGGCCACCGAGGTCGGTGCCAGAGTTGATGCTCTCCAAGCATCCCTGCACCACCACCACGTGGCGCCGCCGCCGCCGGAGCTTCTCTCGCGCGGAGACGGAGGTGGGTCCGGGGATTTCGCGGTTGACCTGAACAAGATGCCCGAACCCGAGAGTGAGGACTGCGAATGGGATGTGAATTGA 513 0.6082 MEPQGRTGGEREPTRKRSGVAVAVDGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPDLLVGEGAAALVAGCDMSAASIRKKATEVGARVDALQASLHHHHVAPPPPELLSRGDGGGSGDFAVDLNKMPEPESEDCEWDVN 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02130 170 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Viun2g02130 170 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 24 164 - -
Viun2g02130 170 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Viun2g02130 170 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Viun2g02130 170 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Viun2g02130 170 MobiDBLite consensus disorder prediction 129 170 - -
Viun2g02130 170 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Viun2g02130 170 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Viun2g02130 170 CDD AP2 29 88 IPR001471 GO:0003700|GO:0006355
Viun2g02130 170 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Viun2g02130 170 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02130 Viun-Chr2 29394865 29395856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02130 17 164 AP2-EREBP Transcription Factor Family AT3G50260 61.486 3.23e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Viun2g02130 AP2 1.1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02130 K09286 - gmx:100527066 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02130 2 29394865 29395856 Viun2g02130 2 29394865 29395856 ECH
Viun2g02130 2 29394865 29395856 Viun3g03855 3 45823505 45824469 PCT