Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02127 ATGTGGGATCTGAATGACTCTCCCCATCAGAGGAAGGACTATGAATCTGAAGGTTGCTCTTCGTTGGATGATGATAAAGGCAGGAGAGTGGGATATGTTTCAAATTCAAGTTCCTCTGCTGTGGTCCTCGAAGATGGATTGGAAGAAGAAGACAGTGACAGGGGTGGAAGCAGAACATTGGAGAGAAAAAGTAGTAAAATATTCGGCTTTTCAGTTACACACAATGACAGTGACCACCCACCCGTCACCCAGCAGTTTTTTTCGGTGGATTCCGATCTTCCTGTCTCCGAAGCAGCTGCCGTCGCCCGCGGAAGCTCCTTCCCTCGAGCTCACTGGGTAGATGTGAAATTCCGTCAATCGGAAACTCTTAGCGCCGGAAAATCAGTGAAAGTGTCGGAGCCGATGAAGAAAAGTCGGCGAGGACCACGGTCACGAAGCTCACAGTATCGCGGAGTTACCTTTTACAGAAGAACTGGTAGATGGGAGTCTCATATATGGGATTGTGGAAAGCAAGTGTATTTGGGTGGATTTGACACAGCACATGCAGCTGCTCGTGCTTATGATAGAGCGGCCATTAAGTTCCGGGGAGTGGAGGCAGATATAAACTTCAACATAGAAGACTATGAAGAAGATTTGAAGCAGATGAACAATTTAACCAAGGAAGAGTTTGTGCACGTACTTCGCCGACAAAGCACTGGATTTCCGAGAGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGACGATGGGAGGCTCGAATGGGCCAATTTTTGGGAAAAAAGTACGTTTATCTGGGTCTGTTTGACACCGAGATTGAAGCTGCAAGGGCATATGACAAAGCGGCAATAAAATGCAACGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCGTATATGATAATGAACTTAATTCTGATTCCTCAGGTGTAGCTGCAGATCACAATCTGGATTTGAGTTTGGGCAATTTGAGCTCTAGGCCTGGCAATGGTCAAATATCGGGGAATCACTTCCCAAATTCTGCGTCCGATCAACACCTGCCACCTGCATCTAGTTGGAGGAATGGAGGAACTAATCCTAAGATTCATCTTGTAAATATACTACCAAAACCATGTGATAGGAGCAACATGGAAGCCTATGCAAGAGATTGGCTCGGGGAGAGTGAAACCTTGAGACTGCTAAGCCAAACTCACCTTCAATCTCCAACGACCAAAGAAATGCATAGATATGGTCCATATAGGTCACCTGCTGAGCCTCAACTGTCTCATAATTTTGCACGTCTTCACCCACCAATTTTTCATGTTCCCAGCAGCAGCAACAACGGAGGCCGTATTGGAAGCGATCTTTCGTTATCAATGTCTGATGAACAGCAATGGCAAGCCGGGCATCCACATTTGTTAGCAACTGCTGCAGCATCATCAGGATTCCCACCTCAGATTACACCCTCCCTAAGTTGGTAG 1464 0.4652 MWDLNDSPHQRKDYESEGCSSLDDDKGRRVGYVSNSSSSAVVLEDGLEEEDSDRGGSRTLERKSSKIFGFSVTHNDSDHPPVTQQFFSVDSDLPVSEAAAVARGSSFPRAHWVDVKFRQSETLSAGKSVKVSEPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEEDLKQMNNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSVYDNELNSDSSGVAADHNLDLSLGNLSSRPGNGQISGNHFPNSASDQHLPPASSWRNGGTNPKIHLVNILPKPCDRSNMEAYARDWLGESETLRLLSQTHLQSPTTKEMHRYGPYRSPAEPQLSHNFARLHPPIFHVPSSSNNGGRIGSDLSLSMSDEQQWQAGHPHLLATAAASSGFPPQITPSLSW 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02127 487 Coils Coil 198 218 - -
Viun2g02127 487 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 CDD AP2 148 205 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 Gene3D AP2/ERF domain 147 206 IPR036955 GO:0003700|GO:0006355
Viun2g02127 487 Gene3D AP2/ERF domain 239 298 IPR036955 GO:0003700|GO:0006355
Viun2g02127 487 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 Pfam AP2 domain 239 288 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 MobiDBLite consensus disorder prediction 126 148 - -
Viun2g02127 487 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 SUPERFAMILY DNA-binding domain 147 205 IPR016177 GO:0003677
Viun2g02127 487 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 PRINTS Ethylene responsive element binding protein signature 279 299 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 FunFam AP2-like ethylene-responsive transcription factor 239 299 - -
Viun2g02127 487 SUPERFAMILY DNA-binding domain 239 299 IPR016177 GO:0003677
Viun2g02127 487 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 392 - -
Viun2g02127 487 MobiDBLite consensus disorder prediction 329 357 - -
Viun2g02127 487 MobiDBLite consensus disorder prediction 1 60 - -
Viun2g02127 487 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
Viun2g02127 487 MobiDBLite consensus disorder prediction 1 30 - -
Viun2g02127 487 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02127 Viun-Chr2 29373087 29377241 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02127 1 324 AP2-EREBP Transcription Factor Family AT4G36920 68.437 1.53e-130 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Viun2g02127 AP2 3.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02127 K09284 - gmx:100786333 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02127 2 29373087 29377241 Viun2g02127 2 29373087 29377241 ECH
Viun2g02127 2 29373087 29377241 Viun3g03852 3 45775010 45778646 PCT